View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_7 (Length: 501)
Name: NF7506_low_7
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 32577650 - 32577356
Alignment:
| Q |
15 |
atttttgcatctcattcgcccttccgcttttatattctacactttctctgattttttcttagacaaacgatgtgggacttaaaaactgtggtgatacaaa |
114 |
Q |
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| T |
32577650 |
atttctgcatctcattcgcccttccgcttttatattctacactttctctgattttttcttagacaaacgatgtgggacttaaaaactgtggtgatacaaa |
32577551 |
T |
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| Q |
115 |
acttagtaggctcgtacacttacttcgtttcttttatattgaaacttcaacttatagcaaagccttattttacagaatattgaagatccccacattcttc |
214 |
Q |
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| T |
32577550 |
acttagtaggctcatacactttcttcgtttcttttatattgaaacttcaacttatagcaacgccttattttacagaatattgaagatccccacattcttc |
32577451 |
T |
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| Q |
215 |
tttcttttaattagcaatgtaaaatcaatgctgatcattagttttatttgttggaattttttatacattcaataactagaatgacctcacacatt |
309 |
Q |
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| T |
32577450 |
tttcttttaattagcaatgtaaaatcaatgctgatcaggtgttttatttgttggaattttttatacattcaataactagaatgacctcacacatt |
32577356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 307 - 493
Target Start/End: Complemental strand, 32576575 - 32576404
Alignment:
| Q |
307 |
attctatcctattcaactaaaaagaatgaggaaaaagatggttatatttgatcttgtatatgaaatgtcaaaaaggacaaaaatagctagttctcctaaa |
406 |
Q |
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| T |
32576575 |
attctatcctattcaactaaaaagaatgaggaaaaagatggttatatttgatcttgtatatgaaatgtcaaaaaggacaaaaatagctagttctcctaaa |
32576476 |
T |
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| Q |
407 |
taattataacatttggctctatgaaatgtaacaaccttaaacataggaaccaaagctaaaccacatttaaaaaaccagattcttctc |
493 |
Q |
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| T |
32576475 |
taattataacatttggctcta---------------tcaaaaataggaaccaaagctaaaccacatttaaaaaaccagattcttctc |
32576404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 32613049 - 32612974
Alignment:
| Q |
307 |
attctatcctattcaactaaaaagaatgaggaaaaagatggttatatttgatcttgtatatgaaatgtcaaaaagg |
382 |
Q |
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| T |
32613049 |
attctatcctcttcaacaaaaaagaatgaggaaaaagatggttatctttgatcttgtatatgaaatgtcaaaaagg |
32612974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 305 - 493
Target Start/End: Complemental strand, 32571284 - 32571095
Alignment:
| Q |
305 |
acattctatcctattcaactaaaaagaatgaggaaaaagatggttatatttgatcttgta---tatgaaatgtcaaaaaggacaaaaatagctagttctc |
401 |
Q |
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| T |
32571284 |
acattctatcctcttcaacaaaaaagaatgaagaaaaagatggttacaattgatcttttgatctatgaattgtcaaaaaagacaaacatagctagttttc |
32571185 |
T |
|
| Q |
402 |
ctaaataattataacatttggctctatgaaatgtaacaaccttaaacataggaaccaaagctaaaccacatttaaaaaaccagattcttctc |
493 |
Q |
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| T |
32571184 |
ctaaata-tgataacatcaggtggtatgaaaaataacaaccctaaacataggaacaaaacttgaatcacatat-aaaaaccagactcttctc |
32571095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 32613893 - 32613831
Alignment:
| Q |
232 |
tgtaaaatcaatgctgatcattagttttatttgttggaattttttatacattcaataactaga |
294 |
Q |
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|||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| |
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| T |
32613893 |
tgtaaaatcaatgcagatcagaggttttattttttggaattttttatacattcaagaactaga |
32613831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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