View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7506_low_8 (Length: 498)

Name: NF7506_low_8
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7506_low_8
NF7506_low_8
[»] chr3 (2 HSPs)
chr3 (222-270)||(16205706-16205754)
chr3 (222-271)||(22616645-22616694)
[»] chr7 (3 HSPs)
chr7 (222-268)||(42494883-42494929)
chr7 (222-271)||(6980970-6981019)
chr7 (222-254)||(48583418-48583450)
[»] chr4 (3 HSPs)
chr4 (201-271)||(13837842-13837912)
chr4 (95-140)||(13837852-13837897)
chr4 (222-254)||(43404616-43404648)
[»] chr2 (3 HSPs)
chr2 (222-275)||(532164-532217)
chr2 (222-271)||(18182498-18182547)
chr2 (226-278)||(3094290-3094342)
[»] chr6 (1 HSPs)
chr6 (222-273)||(28606584-28606635)
[»] chr8 (1 HSPs)
chr8 (222-271)||(3647498-3647547)


Alignment Details
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 16205754 - 16205706
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaagt 270  Q
    ||||||||||||||||||||||||||||||||| || | ||||||||||    
T  16205754 tgtggttgatcaatgtcacatgacattggcaccccaatgtcacccaagt 16205706  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 22616645 - 22616694
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaagtg 271  Q
    ||||||||||||||||||||||||||||  ||| || | |||||||||||    
T  22616645 tgtggttgatcaatgtcacatgacattgatacctcagtgtcacccaagtg 22616694  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 42494883 - 42494929
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaa 268  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||||    
T  42494883 tgtggttgaccaatgtcacatgacattggcaccacaatgtcacccaa 42494929  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 6980970 - 6981019
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaagtg 271  Q
    ||||||||  |||||||||||||||||||||||  | |||||||||||||    
T  6980970 tgtggttggccaatgtcacatgacattggcaccctaatttcacccaagtg 6981019  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 48583418 - 48583450
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcacc 254  Q
    ||||||||| |||||||||||||||||||||||    
T  48583418 tgtggttgaccaatgtcacatgacattggcacc 48583450  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 13837912 - 13837842
Alignment:
Q  201 aaagaatgacatgtggcatactgtggttgatcaatgtcacatgacattggcaccacattttcacccaagtg 271  Q
    |||| |||||||||| || | ||||||||  |||||||||||||||||||||||||| | |||| ||||||    
T  13837912 aaaggatgacatgtgtcacattgtggttggccaatgtcacatgacattggcaccacaatgtcacacaagtg 13837842  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 13837852 - 13837897
Alignment:
Q  95 acattgtggtaccaatatcatatgacattggccaactacaatgtga 140  Q
    |||||||||| ||||| |||| |||||||||||||| |||||||||    
T  13837852 acattgtggtgccaatgtcatgtgacattggccaaccacaatgtga 13837897  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 43404616 - 43404648
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcacc 254  Q
    |||||||||||||||||| ||||||||||||||    
T  43404616 tgtggttgatcaatgtcagatgacattggcacc 43404648  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 532217 - 532164
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaagtgttgt 275  Q
    ||||||||  |||||||||||||||||||||||||  | |||||||||||||||    
T  532217 tgtggttggccaatgtcacatgacattggcaccaccatgtcacccaagtgttgt 532164  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 18182547 - 18182498
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaagtg 271  Q
    ||||||||  ||||||||||||||||||||||| || | |||||||||||    
T  18182547 tgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtg 18182498  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 3094290 - 3094342
Alignment:
Q  226 gttgatcaatgtcacatgacattggcaccacattttcacccaagtgttgttcg 278  Q
    ||||| |||||||||||||||||| ||||||| | || || ||||||||||||    
T  3094290 gttgaccaatgtcacatgacattgacaccacaatgtcgcctaagtgttgttcg 3094342  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 28606584 - 28606635
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaagtgtt 273  Q
    ||||||||  ||||||||||||||||||||||| || | |||||||||||||    
T  28606584 tgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgtt 28606635  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 3647498 - 3647547
Alignment:
Q  222 tgtggttgatcaatgtcacatgacattggcaccacattttcacccaagtg 271  Q
    ||||||||  ||||||||||||||||||||||| || | |||||||||||    
T  3647498 tgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtg 3647547  T

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