View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7507_low_2 (Length: 411)
Name: NF7507_low_2
Description: NF7507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7507_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 27043450 - 27043841
Alignment:
| Q |
7 |
aaaacaacgccgcaagaccaaacatcagctttggcaccttcatagcctttcttcgcaagaatctccggtgccacgtaggacggcgtcccacaaactgtgt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27043450 |
aaaacaacgccgcaagaccaaacatcagctttggcaccttcatagcctttcttcgcaagaatctccggtgccacgtaggacggcgtcccacaaacggtgt |
27043549 |
T |
|
| Q |
107 |
gaagcaacccgtcgggtcggatctgatttttaaccgcgcttaaaccaaaatccgttactttgagattatcattctcatcaagtaaaagattatccaattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27043550 |
gaagcaacccgtcgggtcggatctgatttttaaccgcgcttaaaccaaaatccgttactttgagattatcattctcatcaagtaaaagattatccaattt |
27043649 |
T |
|
| Q |
207 |
aagatcacggtggaaaacaccgcgagagtgacagtgtttcacggcggagataagttgccggaagtatcttcttgcatgatcttctgtaagcttttctttc |
306 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27043650 |
aagatcacggtgaaaaacaccgcgagagtgacagtgtttcacggcggagataagttgccggaagtatcttcttgcatgatcttctgtaagcttttctttc |
27043749 |
T |
|
| Q |
307 |
ttggctacttcttcgaagagttcaccagcttcagcgaactccacgacgaagtagattttggtcttggaagccaggacttcgaagagatcgat |
398 |
Q |
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| T |
27043750 |
ttggctacttcttcgaagagttcaccagcttcagcgaactccacgacgaagtagattttgctcttcgaagcgaggacttcgaagagatcgat |
27043841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 27312209 - 27312362
Alignment:
| Q |
7 |
aaaacaacgccgcaagaccaaacatcagctttggcaccttcatagcctttcttcgcaagaatctccggtgccacgtaggacggcgtcccacaaactgtgt |
106 |
Q |
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||||||||||| || |||||||||||| |||||||||| ||||| ||| ||| ||||||| ||| ||||||||||| | || || ||||||| || | |
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| T |
27312209 |
aaaacaacgccacatgaccaaacatcaactttggcaccatcatatcctcgcttagcaagaacctcaggtgccacgtaagcaggggttccacaaagagtat |
27312308 |
T |
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| Q |
107 |
gaagcaacccgtcgggtcggatctgatttttaaccgcgcttaaaccaaaatccg |
160 |
Q |
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||||||| || |||| ||||||||||||| | || || ||||| || ||||||| |
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| T |
27312309 |
gaagcaatccatcggatcggatctgatttgtgactgcacttaacccgaaatccg |
27312362 |
T |
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