View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7507_low_3 (Length: 325)
Name: NF7507_low_3
Description: NF7507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7507_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 39630660 - 39630954
Alignment:
| Q |
14 |
agatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcagctc |
113 |
Q |
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| T |
39630660 |
agatacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcagctc |
39630759 |
T |
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| Q |
114 |
atggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcgatga |
213 |
Q |
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| T |
39630760 |
atggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaacttaaaactttagtacatatcgatga |
39630859 |
T |
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| Q |
214 |
atgatgaaatttaacgttctttaattaatttttcagtaaagactgactccctttgaaaatgcttttatttcttcccagatggtagaggacccatc |
308 |
Q |
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| T |
39630860 |
atgatgaaatttaacgttctttaattaatttttcagtaaagactgactccctttgaaaatgcttttatttcttcccagatggtagaggacccatc |
39630954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 39641448 - 39641736
Alignment:
| Q |
16 |
atacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcagctcat |
115 |
Q |
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| T |
39641448 |
atacaaggtaaacaagacacaaggcttctatctttctaattttgtctagtaatgcattctttatgattcatcttttaatgcaggaagatgtgcagctcat |
39641547 |
T |
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| Q |
116 |
ggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcgatgaat |
215 |
Q |
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| T |
39641548 |
ggttgaaacaggtcttgaagcctatagattttccatttcttggtcaagattgataccaagtattccactgaact-taaactttaatacagatcgatgaat |
39641646 |
T |
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| Q |
216 |
gatgaaatttaacgttctttaattaatttttcagtaaagactgactccctttgaaaatgcttttatttcttcccagatggtagaggaccc |
305 |
Q |
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| T |
39641647 |
ggtgaaatttgacgttctttaattattttttcagtgaagactaactcccttcgaaaatgtttgtatttcttcccagatggtaaaggaccc |
39641736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 29121819 - 29122106
Alignment:
| Q |
16 |
atacaaggtaaacaagacacaaggcttctatctttctaattttatctggtaatgcattctttctgattcatcttttaatgcaggaggatgtgcagctcat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
29121819 |
atacaaggtaaacaagacacaaggcttctatctttctaattttgtccggtaatgcattctttctgattcatcttttaatgcaggaagatgtgcaactcat |
29121918 |
T |
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| Q |
116 |
ggttgaaacaggccttgatgcctataggttttccatttcttggtcaagattgataccaagtatttaactgaactaaaaactttagtacatatcgatgaat |
215 |
Q |
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| T |
29121919 |
ggttgaaacaggcctcgatgcctataggttttccatttcttggtcaagattgataccaagtattctactgaact-taaactttagtacatatcgatgaat |
29122017 |
T |
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| Q |
216 |
gatgaaatttaacgttctttaattaatttttcagtaaagactgactccctttgaaaatgcttttatttcttcccagatggtagaggacc |
304 |
Q |
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| |||||||||| |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29122018 |
ggtgaaatttaaagttctttaatcattttttcagtaaagacttactccctttgaaaatgcttttatttcttcccagatggtagaggacc |
29122106 |
T |
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