View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_high_15 (Length: 391)
Name: NF7508_high_15
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 4980330 - 4980447
Alignment:
| Q |
12 |
gaatatgtaccttgactgacctcgacataaatgttacaataatgacgtggctatgcattattgcatctagaagtaaaacaccaggacaccaccttaactt |
111 |
Q |
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| T |
4980330 |
gaatatgtaccttgactgacctcgacataaatgttacaataatgacgtggctatgcattgttgcatctagaagtaaaacaccagtacaccaccttaattt |
4980429 |
T |
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| Q |
112 |
ggagaaattattctaccg |
129 |
Q |
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| T |
4980430 |
ggtgaaattattctaccg |
4980447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 253 - 373
Target Start/End: Original strand, 4980566 - 4980681
Alignment:
| Q |
253 |
gatgtaaatgtgtccaaatatttatcatttttagttgtgtttacagaagagtttcttctttaatcaatcctaaacaaaaatattcatagaaaaagaatac |
352 |
Q |
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| T |
4980566 |
gatgtaaatgtgttcaaatatttatcatttttgattgtgtttacataagagtttc----ttaatcaatcctaaacaaaaatattcatag-aaaagaatac |
4980660 |
T |
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| Q |
353 |
gtggactgcattatgcattat |
373 |
Q |
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| T |
4980661 |
gtggactgcataatgcattat |
4980681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 23126908 - 23126948
Alignment:
| Q |
268 |
aaatatttatcatttttagttgtgtttacagaagagtttct |
308 |
Q |
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| T |
23126908 |
aaatatttatcatttgtagttgtgtatatagaagagtttct |
23126948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 9417257 - 9417312
Alignment:
| Q |
253 |
gatgtaaatgtgtccaaatatttatcatttttagttgtgtttacagaagagtttct |
308 |
Q |
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| T |
9417257 |
gatgtaactgtgcccaaatatttatcatttgtggttgtgtttatagaagagtttct |
9417312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 38734655 - 38734608
Alignment:
| Q |
261 |
tgtgtccaaatatttatcatttttagttgtgtttacagaagagtttct |
308 |
Q |
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| T |
38734655 |
tgtgtctaaatatttatcatttatagttgtgtttatagaagagtttct |
38734608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 42107120 - 42107160
Alignment:
| Q |
268 |
aaatatttatcatttttagttgtgtttacagaagagtttct |
308 |
Q |
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| T |
42107120 |
aaatatttatcatttgtagttgtgtttaaagaagagtttct |
42107160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 8245398 - 8245358
Alignment:
| Q |
268 |
aaatatttatcatttttagttgtgtttacagaagagtttct |
308 |
Q |
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||||||||||||||| || ||||||||| |||||||||||| |
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| T |
8245398 |
aaatatttatcatttgtaattgtgtttatagaagagtttct |
8245358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 39141873 - 39141822
Alignment:
| Q |
257 |
taaatgtgtccaaatatttatcatttttagttgtgtttacagaagagtttct |
308 |
Q |
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| T |
39141873 |
taaatgtgtccaaatatttatcatttatatttgtgttcacgtaagagtttct |
39141822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 54449817 - 54449763
Alignment:
| Q |
254 |
atgtaaatgtgtccaaatatttatcatttttagttgtgtttacagaagagtttct |
308 |
Q |
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|||| |||||||| ||||||||||||||| | ||||||| || |||||||||||| |
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| T |
54449817 |
atgtgaatgtgtctaaatatttatcatttatggttgtgtctatagaagagtttct |
54449763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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