View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_high_3 (Length: 704)
Name: NF7508_high_3
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Original strand, 51404045 - 51404742
Alignment:
| Q |
1 |
atttctcatgaacaccaagggattggttgagctcattgttctcaacatcggaaaggatcgcaaggtacctatctgtcttcctatctatccagattttgat |
100 |
Q |
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| T |
51404045 |
atttctcatgaacaccaagggattggttgaactcattgttctcaacatcggaaaggatcgcaaggtacctatctgtcttcctatctatccagattttgat |
51404144 |
T |
|
| Q |
101 |
cgcttgtagtcagcaatctcaaatatccatggagtcagcacatcagtgacatttgggtcgagatcagactatccatattttagtgcgattttgatttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404145 |
cgcttgtagtcagcaatctcaaatatccatggagtcagcacatcagtgacatttgggtcgagatcagactatccatattttagtgcgattttgatttttc |
51404244 |
T |
|
| Q |
201 |
agaaaagaactaaaatatcgggtttgaagtttgaaccgtctgatttcgatccaaatgccactaatgtaccgactgtcttaatgtgtggattgctagctgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404245 |
agaaaagaactaaaatatcgggtttgaagtttgaaccgtctgatttcgatccaaatgccactaatgtaccgactgtcttaatgtgtggattgctagctgc |
51404344 |
T |
|
| Q |
301 |
agacaatctaaatccttattgatcctctaatactaaatgataaaataaaacttgttttctaagtaataaatagaagtatccaattattatcaaatatttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404345 |
agacaatctaaatccttattgatcctctaatacttaatgataaaatagaacttgttttctaagtaataaatagaagtatccaattattatcaaatatttg |
51404444 |
T |
|
| Q |
401 |
aaatctttcattactttggtttgattttttatacatgtaatgtaattctccatgtaacacaggtactaaatgaccaagcatttgcaatttgtgttcttat |
500 |
Q |
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| T |
51404445 |
aaatctttcattactttggtttgattttttatacatgtaatgtaattctccatgtaacacaggtactaaatgaccaagcatttgcaatttgtgttcttat |
51404544 |
T |
|
| Q |
501 |
ggcattattcacaaccttcatcaccaccccaatagtgatggcagtatacaaaccagctcgaagaggagcaccttataaacacaaaacagtccaacgcaaa |
600 |
Q |
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| T |
51404545 |
ggcattattcacaaccttcatcaccaccccaatagtgatggcagtatacaaaccagctcgaagaggagcaccttataaacacaaaacagtccaacgcaaa |
51404644 |
T |
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| Q |
601 |
gatcaagaatcagagctcagagtcttggcatgtttccacagcacacgcaacatccctacactaatcaaccttgtagaatcatcccgaggaacacgaaa |
698 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51404645 |
gatcaagaatcagagctcagagtcttggcatgtttccacagcacacgcaacatccctacactaatcaaccttgtagaatcatcccgaggaacccgaaa |
51404742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29982782 - 29982716
Alignment:
| Q |
1 |
atttctcatgaacaccaagggattggttgagctcattgttctcaacatcggaaaggatcgcaaggta |
67 |
Q |
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| T |
29982782 |
atttctcatgaacaccaagggattggtggagctcattgttctcaacatcggcaaggatcgcaaggta |
29982716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 461 - 698
Target Start/End: Complemental strand, 29982196 - 29981959
Alignment:
| Q |
461 |
aggtactaaatgaccaagcatttgcaatttgtgttcttatggcattattcacaaccttcatcaccaccccaatagtgatggcagtatacaaaccagctcg |
560 |
Q |
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||||||| | ||| |||||||||||||| |||||| | |||||| | ||||||| ||||| ||||| ||||||||||||||||| || ||||||||| | |
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| T |
29982196 |
aggtactgagtgatcaagcatttgcaatatgtgttgtaatggcactggtcacaactttcattaccacaccaatagtgatggcagtgtataaaccagctag |
29982097 |
T |
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| Q |
561 |
aagaggagcaccttataaacacaaaacagtccaacgcaaagatcaagaatcagagctcagagtcttggcatgtttccacagcacacgcaacatccctaca |
660 |
Q |
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| T |
29982096 |
gagaggatcaccatacatgcataaaacgattcagcgcaaagatccagacacggagcttaggatactagcttgtttccacagcacctacaacattcctacc |
29981997 |
T |
|
| Q |
661 |
ctaatcaaccttgtagaatcatcccgaggaacacgaaa |
698 |
Q |
| |
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||||||| || |||||||||| ||||||||||||| |
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| T |
29981996 |
ttaatcaatctaatagaatcatcaagaggaacacgaaa |
29981959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 560
Target Start/End: Original strand, 40071538 - 40071602
Alignment:
| Q |
496 |
cttatggcattattcacaaccttcatcaccaccccaatagtgatggcagtatacaaaccagctcg |
560 |
Q |
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||||||||| | ||||||||||||||||| |||||| | ||||||||| | ||||| |||||||| |
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| T |
40071538 |
cttatggcactcttcacaaccttcatcacaaccccagtggtgatggcaatctacaatccagctcg |
40071602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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