View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_high_32 (Length: 204)
Name: NF7508_high_32
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 7806656 - 7806483
Alignment:
| Q |
13 |
agaatatagtagatttaacgtgacaaattggctccaagaggcnnnnnnncctcatatagaggaaattcatctcactttgcctttccacaccttaaagcat |
112 |
Q |
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| T |
7806656 |
agaaaatagtagatttaacgtgacaaattggctccaagaggcaaaaaaacctcatatagaggaaattcatctcactttgcctttccacaccttaaagcat |
7806557 |
T |
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| Q |
113 |
gttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgt |
186 |
Q |
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| T |
7806556 |
gttattttcgtctcgcaaactcttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgt |
7806483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 3255621 - 3255567
Alignment:
| Q |
115 |
tattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttgga |
169 |
Q |
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| T |
3255621 |
tattttcatcttccaaacccttgttgttctcaaacttgaaaggttaaatgttgga |
3255567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 7871599 - 7871637
Alignment:
| Q |
113 |
gttattttcgtctcgcaaacccttgttgttctcaaactt |
151 |
Q |
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| T |
7871599 |
gttattttcatctctcaaacccttgttgttctcaaactt |
7871637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 19317461 - 19317345
Alignment:
| Q |
64 |
tcatatagaggaaattcatctcactttgcctttccacaccttaaagcatgttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatat |
163 |
Q |
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| T |
19317461 |
tcatatagaagaaattcatctcagtttgccttcccataccttgatgcccgatctttttgtctctcaaacccttgttgttctaaaacttgaaagtttatat |
19317362 |
T |
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| Q |
164 |
gttggaaaggatacttc |
180 |
Q |
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| T |
19317361 |
gttggaaagggtacttc |
19317345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 37997345 - 37997280
Alignment:
| Q |
114 |
ttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatactt |
179 |
Q |
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| T |
37997345 |
ttattttcatctcccaaacccttgttgttctcaaacttaaaaggttaaatgttggaaatgatactt |
37997280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 14017997 - 14018079
Alignment:
| Q |
98 |
cacaccttaaagcatgttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttc |
180 |
Q |
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|||||||| |||| ||| ||||| | || |||||| |||||||||||||||||||| | ||| || ||| |||||||||||| |
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| T |
14017997 |
cacaccttgaagcccgttgttttcatatcccaaacctttgttgttctcaaacttcaacggttagatattgaaaaggatacttc |
14018079 |
T |
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