View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_1 (Length: 907)
Name: NF7508_low_1
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 14 - 742
Target Start/End: Original strand, 13144587 - 13145300
Alignment:
| Q |
14 |
tggtgttgtgtgttatttcaaaaatatatgaaatttactttattcatttcattttaatcatttgtttacaatattttaatattgttagttttggttattc |
113 |
Q |
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| T |
13144587 |
tggtgttgtgtgttatttcaaaaacatatgaaatttactttattcatttcattttaatcatttgtttacaatattttaatattgttagttt-ggttattc |
13144685 |
T |
|
| Q |
114 |
ttgaacaataataatatttcataattcttagtgttgttctttattcattcttgaatcgaattattacagtgatttgatgctttaataatgtgtttatcat |
213 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13144686 |
ttgaataataataatatttcataattcttaatgttgttctttattcattcttgaatcgaattattacagtgatttgatgctttaataatgtgtttatcat |
13144785 |
T |
|
| Q |
214 |
taaaacctacgaaaattacacacatagtggttgatttttgtaaacattgacatgtcattcgtgtacatttttctctgtaaaagggatatggaaatgatcc |
313 |
Q |
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| T |
13144786 |
taaaacctacgaaaattacacacatagtggttgatttttgtaaacatcgacgtgtcattcgtgtacacttttctctgtaaaagggatatggaaatgatcc |
13144885 |
T |
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| Q |
314 |
agcggcggcgaacatagtggaaccttgactttctattcactttgaatatttttctcattgctatatatatgcttttattttgagggtgccaattctcata |
413 |
Q |
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| T |
13144886 |
agcagcggcggccatagtggaaccttgactttctattcactttgaatatttttctcattgc----tatatgcttttattttgagggtgccaattctcata |
13144981 |
T |
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| Q |
414 |
atgtatttgcattacaatttacaaccgaagatgctttaaaaaataaattataactgaaaccaataatatgtttaatnnnnnnnntcttttggtggaaagc |
513 |
Q |
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| T |
13144982 |
atgtatttgcattacaatttacaaccgaagctgctttaaaaaataaattataactgaaaccaataatatgtttaataaaaaaaatcttttg--------- |
13145072 |
T |
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| Q |
514 |
ccgtcaaattacaattatcatatttttatatatactatcatattttcttgat-nnnnnnncatattttcttaagtgttaaatgatcaaatgtgacaatta |
612 |
Q |
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| T |
13145073 |
--gtaaaattacaattatcatatttttatatatactatcatattttcttgataaaaaaaacatattttctttagtgttaaatgatcaaatgtgacaatta |
13145170 |
T |
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| Q |
613 |
ttataaggcagaaataatattcaattttattatatgagtcatgattacaagatcaaaacaagacaaccattttattgcagacatgcatacaaagagaaac |
712 |
Q |
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| T |
13145171 |
ttataaggcagaaataatattcaattttattatatgagtcgtgattacaagatcaaaacaagacaaccattttattgcagacatgcatacaaagagaaac |
13145270 |
T |
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| Q |
713 |
cttaattatataaataaatgtcactcttaa |
742 |
Q |
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| T |
13145271 |
cttaattatataaataaatgtcactcttaa |
13145300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 772 - 891
Target Start/End: Original strand, 13145302 - 13145421
Alignment:
| Q |
772 |
ccatcaatttctcaatccatgttccctaaaatccaaatggatactttttctgtttattattaggattaaatactccaaaatgtttctccaactcaggatt |
871 |
Q |
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| T |
13145302 |
ccatcaatttctcaatccatgttccctaaaatccaaatggatactttttctgtttattattaggattaaatactccaaaatgtttctccaactcaggatt |
13145401 |
T |
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| Q |
872 |
cttcttattctcatcaaaca |
891 |
Q |
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| T |
13145402 |
cttcttattctcatcaaaca |
13145421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 795 - 891
Target Start/End: Original strand, 13152092 - 13152185
Alignment:
| Q |
795 |
ccctaaaatccaaatggatactttttctgtttattattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaaca |
891 |
Q |
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| T |
13152092 |
ccctgaaatccaaatggatactttttctgtttatta---ggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaaca |
13152185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 13144367 - 13144503
Alignment:
| Q |
86 |
attttaatattgttagttttggttattcttgaacaataataatatt------tcataattcttagtgttgttctttattcattcttgaatcga-attatt |
178 |
Q |
| |
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||||||||||||| ||||| ||||||||||||| |||||||||| | ||||||||||| |||||||| |||||||||||||| |||| ||||| |
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| T |
13144367 |
attttaatattgtaagttt-ggttattcttgaataataataataataataattcataattcttgatgttgttccttattcattcttgattcgattttatt |
13144465 |
T |
|
| Q |
179 |
acagtgatttgatgctttaataatgtgtttatcattaa |
216 |
Q |
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| T |
13144466 |
atagtgatttgattatttaataatgtgtttatcattaa |
13144503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 640 - 736
Target Start/End: Original strand, 13151920 - 13152016
Alignment:
| Q |
640 |
tattatatgagtcatgattacaagatcaaaacaagacaaccattttattgcagacatgcatacaaagagaaaccttaattatataaataaatgtcac |
736 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||| |||| || |||| | |||| |||||||||||||||| ||| |||||| |
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| T |
13151920 |
tattatatgagttgtggttacaagatcaaaacaagacaaccattttatttcagatatacataaagagagcaaccttaattatataattaagtgtcac |
13152016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 828 - 892
Target Start/End: Complemental strand, 13161116 - 13161052
Alignment:
| Q |
828 |
ttattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaacat |
892 |
Q |
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| T |
13161116 |
ttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaacat |
13161052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 13144242 - 13144280
Alignment:
| Q |
147 |
ttgttctttattcattcttgaatcgaattattacagtga |
185 |
Q |
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| T |
13144242 |
ttgttctttattcattcttgaatcgaataattatagtga |
13144280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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