View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7508_low_10 (Length: 463)

Name: NF7508_low_10
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7508_low_10
NF7508_low_10
[»] scaffold0187 (6 HSPs)
scaffold0187 (1-402)||(1-405)
scaffold0187 (77-446)||(27424-27791)
scaffold0187 (75-261)||(6904-7096)
scaffold0187 (75-261)||(17232-17424)
scaffold0187 (345-448)||(6763-6860)
scaffold0187 (345-448)||(17091-17188)
[»] chr1 (7 HSPs)
chr1 (77-446)||(37911286-37911653)
chr1 (72-446)||(37881337-37881708)
chr1 (304-446)||(37867531-37867668)
chr1 (113-261)||(37855174-37855324)
chr1 (364-446)||(37855398-37855480)
chr1 (144-254)||(37867379-37867493)
chr1 (76-116)||(37854886-37854926)
[»] chr7 (2 HSPs)
chr7 (304-446)||(9239736-9239873)
chr7 (144-254)||(9239911-9240025)


Alignment Details
Target: scaffold0187 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 405 - 1
Alignment:
Q  1 atggagggactaacttgattgatatttttcagtcaaggttatagttttaattgatatgttgatgtgcctttgtccaaaagttgaatcataatttactgtt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  405 atggagggactaacttgattgatatttttcaatcaaggttatagttttaattgatatgttgatgtgcctttgtccaaaagttgaatcataatttactgtt 306  T
Q  101 ccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattccttgtctttgtttaacaaaaagggtgtttagtagtaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  305 ccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattccttgtctttgtttaacaaaaagggtgtttagtagtaattg 206  T
Q  201 gtactatataaactgagaccccctagctttcagattgtaacacaagacaac---acacttcctttcttaaatactactttctagtcactaaggctaatta 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||    
T  205 gtactatataaactgagaccccctagctttcagattgtaacacaagacaacacaacacttcctttcttcaatactactttctagtcactaaggctaatta 106  T
Q  298 atattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105 atattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcat 6  T
Q  398 tcagg 402  Q
    |||||    
T  5 tcagg 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 77 - 446
Target Start/End: Complemental strand, 27791 - 27424
Alignment:
Q  77 aaagttgaatcataatttactgttccatgtgaacttgtttaaaccat--gaatattggactcaccctagtggtttgaatccgattcctt-gtctttgttt 173  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||||  ||||| ||||||||||||| |||||||| ||||  ||||    
T  27791 aaagttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccccagtggtttgaatcagattcctttgtctaagttt 27692  T
Q  174 aacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctttcttaaatacta 273  Q
    |||||||||| ||||||    ||||| ||||||||||||   |||||||||||||||||  ||||| ||||| ||||  |||||| || ||| |||||||    
T  27691 aacaaaaaggttgttta----taattagtactatataaatatagaccccctagctttcaatttgtagcacaacacaag-cacttctttccttcaatacta 27597  T
Q  274 ctttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaga 373  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27596 ctttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaaa 27497  T
Q  374 ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27496 ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 27424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 75 - 261
Target Start/End: Complemental strand, 7096 - 6904
Alignment:
Q  75 caaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtt 172  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||    
T  7096 caaaagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtt 6997  T
Q  173 taacaaaaagggtgtttag-tagtaa---ttggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctt 261  Q
    ||||||||||||||||||| ||||||   || ||||||||||||||||||||||||||||| ||  || || ||||| | |||||||||||||    
T  6996 taacaaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagcttccaagttttagcacaacataacacacttcctt 6904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 75 - 261
Target Start/End: Complemental strand, 17424 - 17232
Alignment:
Q  75 caaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtt 172  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||    
T  17424 caaaagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtt 17325  T
Q  173 taacaaaaagggtgtttag-tagtaa---ttggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctt 261  Q
    ||||||||||||||||||| ||||||   || ||||||||||||||||||||||||||||| ||  || || ||||| | |||||||||||||    
T  17324 taacaaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagcttccaagttttagcacaacataacacacttcctt 17232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 6860 - 6763
Alignment:
Q  345 tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga 444  Q
    |||| ||||||||||||||||   ||| |||||||| |||||||||||||   ||||||| ||||||||||| || |||||||| |||||||||||||||    
T  6860 tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga 6767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 17188 - 17091
Alignment:
Q  345 tagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaaga 444  Q
    |||| ||||||||||||||||   ||| |||||||| |||||||||||||   ||||||| ||||||||||| || |||||||| |||||||||||||||    
T  17188 tagtgaaatgggaggaaacaa---tcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaaga 17095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 77 - 446
Target Start/End: Original strand, 37911286 - 37911653
Alignment:
Q  77 aaagttgaatcataatttactgttccatgtgaacttgtttaaaccat--gaatattggactcaccctagtggtttgaatccgattcctt-gtctttgttt 173  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||||  ||||| ||||||||||||| |||||||| ||||  ||||    
T  37911286 aaagttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccccagtggtttgaatcagattcctttgtctaagttt 37911385  T
Q  174 aacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaacacacttcctttcttaaatacta 273  Q
    |||||||||| ||||||    ||||| ||||||||||||   |||||||||||||||||  ||||| ||||| ||||  |||||| || ||| |||||||    
T  37911386 aacaaaaaggttgttta----taattagtactatataaatatagaccccctagctttcaatttgtagcacaacacaag-cacttctttccttcaatacta 37911480  T
Q  274 ctttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaga 373  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37911481 ctttctagtcactaaggctaattaatattctcattctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcaaa 37911580  T
Q  374 ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37911581 ggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 37911653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 72 - 446
Target Start/End: Original strand, 37881337 - 37881708
Alignment:
Q  72 gtccaaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcctt--gtcttt 169  Q
    ||||||||||||||| |||||||| |||||||  |||  |||||||||||| |||||||| |||||||  | ||| ||||||| |||||| |  |||||     
T  37881337 gtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtctta 37881436  T
Q  170 gtttaacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttcagattgtaacacaagacaa-cacacttcctttcttaaa 268  Q
    ||||||||||| |||||||||  ||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  37881437 gtttaacaaaa-gggtgtttatgagtaattagtactatataaattaagactccctagctttcagattgtaacacaagacaaacacacttcctttcttcaa 37881535  T
Q  269 tactactttctagtcactaaggctaattaatattctcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaa 368  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | | |||| |||||||||||||||        
T  37881536 tactactttctagtcaccaaggataattaatattctcactctcaccaaccaaagagtc-accactctatac-taactagtgaaatgggaggaaacag--- 37881630  T
Q  369 tcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 446  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37881631 tcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 37881708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 304 - 446
Target Start/End: Original strand, 37867531 - 37867668
Alignment:
Q  304 tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt 403  Q
    ||||||||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||    
T  37867531 tcactctcaccaaccaaagtgtc-accactctatac-tcagtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt 37867625  T
Q  404 cagttttcaacatattcaaatctagcagtaacaagcaaagagg 446  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37867626 cagttttcaacatattcaaatctagcagtaacaagcaaagagg 37867668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 37855174 - 37855324
Alignment:
Q  113 gtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtttaacaaaaagggtgtttagtagtaattggtactatata 210  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||||  ||||||| ||||||||||| |||||||||||| ||||| ||||||||||    
T  37855174 gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatata 37855273  T
Q  211 aactgagaccccctagctttcagattgtaacacaagacaacacacttcctt 261  Q
    || |||||||||||||||| ||  ||||| ||||| | |||||||||||||    
T  37855274 aattgagaccccctagcttccaagttgtagcacaacataacacacttcctt 37855324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 364 - 446
Target Start/End: Original strand, 37855398 - 37855480
Alignment:
Q  364 aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37855398 aacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg 37855480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 37867379 - 37867493
Alignment:
Q  144 tggtttgaatccgattccttgtctttgtttaacaaaaaggg-tgttta---gtagtaattggtactatataaactgagaccccctagctttcagattgta 239  Q
    ||||||||||| ||||| ||||||| | |||||||||| || ||||||   ||||||||| |||||||||||| ||||||||| |||||| ||  |||||    
T  37867379 tggtttgaatcagattctttgtcttagcttaacaaaaaaggctgtttattagtagtaatttgtactatataaattgagaccccatagcttccaagttgta 37867478  T
Q  240 acacaagacaacaca 254  Q
     ||||| ||||||||    
T  37867479 gcacaacacaacaca 37867493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 37854886 - 37854926
Alignment:
Q  76 aaaagttgaatcataatttactgttccatgtgaacttgttt 116  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  37854886 aaaagttgaatcataattcactgttccatgtgatcttgttt 37854926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 304 - 446
Target Start/End: Complemental strand, 9239873 - 9239736
Alignment:
Q  304 tcactctcaccaaccaaagagtctaccaccctctacctcagtagtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcaggt 403  Q
    |||||||||||||||||||||||  |||| || ||| || ||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||    
T  9239873 tcactctcaccaaccaaagagtcg-ccactctatac-tcggtagtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggt 9239779  T
Q  404 cagttttcaacatattcaaatctagcagtaacaagcaaagagg 446  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  9239778 cagttttcaacatattcaaatctagcaataacaagcaaagagg 9239736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 9240025 - 9239911
Alignment:
Q  144 tggtttgaatccgattccttgtctttgtttaacaaaaagggt-gttta---gtagtaattggtactatataaactgagaccccctagctttcagattgta 239  Q
    ||||||||||| ||||| ||||||| | |||| ||||| ||| |||||   ||||||||| |||||||||||| |||||||||||||||| ||  |||||    
T  9240025 tggtttgaatcagattctttgtcttagcttaataaaaaaggttgtttattagtagtaatttgtactatataaattgagaccccctagcttccaagttgta 9239926  T
Q  240 acacaagacaacaca 254  Q
     ||||| ||||||||    
T  9239925 tcacaacacaacaca 9239911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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