View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_11 (Length: 442)
Name: NF7508_low_11
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 55371676 - 55371267
Alignment:
| Q |
19 |
cctaagtcacaatcacaagataaaataggataatgtgtttgtttgacataccattacaatgagtagtgaaatttccctccttacataaacacaagaaact |
118 |
Q |
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| T |
55371676 |
cctaagtcacaatcacaagataaaataggataatgtgtttgtttgacataccattacaatgagtagtgaaatttccctccttacataaacacaagaaact |
55371577 |
T |
|
| Q |
119 |
ctgagtctgtgtatcaaatccacaagttccaccaccacctttggattgatcctgacattgaagacaccgcgtcgtcactggaatatcaaaatcaactcta |
218 |
Q |
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| T |
55371576 |
ctgagtctgtgtatcaaatccacaagttccaccaccgcctttggattggtcctgacattgaagacaccgcgtcgtcactggaatatcaaaatcaattcta |
55371477 |
T |
|
| Q |
219 |
atcccatattgaggaacttgatcataaagctgaggagctccaacatttctccaataaacacttgcataacttgtacaatgctcaagcatcaacctcaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
55371476 |
atcccatattgaggaacttgatcataaagctgaggagctccaacatttctccaataaacactagcataacttgtacaatactcaagcatcaacctcaatg |
55371377 |
T |
|
| Q |
319 |
attcagtagctttaggtttataagaacaacaagaactaccactcatagcaaaagaacactctggcaaatgtctacaaagataactagcactatcacaaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55371376 |
attcagtagctttaggtttataagaacaacaagaactaccactcatcgcaaaagaacactctggcaaatgtctacaaagataactagcactatcacaaga |
55371277 |
T |
|
| Q |
419 |
tgaatcacag |
428 |
Q |
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| T |
55371276 |
tgaatcacag |
55371267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 65 - 427
Target Start/End: Complemental strand, 8515636 - 8515277
Alignment:
| Q |
65 |
cataccattacaatgagtagtgaaatttccctccttacataaacacaagaaactctgagtctgtgtatcaaatccacaagttccaccaccacctttggat |
164 |
Q |
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|||||| |||||||| |||||| | ||||| |||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||| ||| || |
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| T |
8515636 |
catacctttacaatgtgtagtggagtttccatccttacacaaacacataaaactctgtgtcaccgtatcaaatccacaagttccaccacc--cttc--at |
8515541 |
T |
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| Q |
165 |
tg-atcctgacattgaagacaccgcgtcgtcactggaatatcaaaatcaactctaatcccatattgaggaacttgatcataaagctgaggagctccaaca |
263 |
Q |
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|| ||||||||| |||||||| | || || || || |||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||| |
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| T |
8515540 |
tgtatcctgacactgaagacaatgagttgtaacaggtatatcaaaatcaactctaatcccatattcaggtacttgatcataaggctgaggaaaaccaaca |
8515441 |
T |
|
| Q |
264 |
tttctccaataaacacttgcataacttgtacaatgctcaagcatcaacctcaatgattcagtagctttaggtttataagaacaacaagaactaccactca |
363 |
Q |
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| T |
8515440 |
tccctccaataaacactagcataactagtacaatacttaagcatcaacctcaaagattcacttgcttttggataataagaacaacaagaactacttgtta |
8515341 |
T |
|
| Q |
364 |
tagcaaaagaacactctggcaaatgtctacaaagataactagcactatcacaagatgaatcaca |
427 |
Q |
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|| ||||||||| |||| ||||||||||| | || |||||||| ||||||||||||||||| |
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| T |
8515340 |
gagaaaaagaacatcctggtaaatgtctacataagtagctagcactttcacaagatgaatcaca |
8515277 |
T |
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