View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_14 (Length: 393)
Name: NF7508_low_14
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 37052193 - 37051835
Alignment:
| Q |
20 |
gggaactcaatctgtttgttctgtttaaaaaatatacctaannnnnnnnatccgaacattatgtcatttattgaacattttggatctttgataatatgat |
119 |
Q |
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| T |
37052193 |
gggaactcaatctgtttgttctgtttaaaaaatattcctaattttttttatccgaacattatgtcatttattgaacattttggatctttgataatatgat |
37052094 |
T |
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| Q |
120 |
tacagtatatgcttgaagctgctgaagcagttactgacaacttgtccatccaagtggagaataatgctcttgatctgcatgagcaggtgattttctttta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37052093 |
tacagtatatgcttgaagctgctgaagcagttactgacaacttgtccatccaagtggagaataatgctcttgatctgcacgagcaggtgattttctttta |
37051994 |
T |
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| Q |
220 |
cttttgtgatttcttactcttcagatgaggtatccttctgagaggggaaagtcgtgtaaagggttgaggcgatagctgatagcagctccagtattagggc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37051993 |
cttttgtgatttcttactcttcagatgaggtatccttctgagaggggaaagtcgtgtaaagggttgaggtgatagctgatagcagctccagtattagggc |
37051894 |
T |
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| Q |
320 |
attatttgagaactggtatgttatacttttgaggattacaggataatactatggcggat |
378 |
Q |
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| T |
37051893 |
attatttgagaactggtatgttatacttttgaggattacaggataatactatggcggat |
37051835 |
T |
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