View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_16 (Length: 387)
Name: NF7508_low_16
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 366
Target Start/End: Complemental strand, 40014618 - 40014264
Alignment:
| Q |
12 |
aaaatgtcacactctcatcatcatgtgaagtgtagtatagtctatgtagtcccctcgtaacgtgcatggaccatgaagtttgtgaggacaatgttcaaac |
111 |
Q |
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| T |
40014618 |
aaaatgtcacactctcatcatcatgtgaagtgtagtatagtccatgtagtcccctcgtaacgtgcatggaccatgaagtttgtgaggacaatgttcaaac |
40014519 |
T |
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| Q |
112 |
aaagaagtttaaggtagtgaccaagacggttgtaacacaacaattaagaaattttattatgtaataagacaacaactcacgtagttctccgaggacatgg |
211 |
Q |
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| T |
40014518 |
aaagaagtttaaggtagtgaccaagacggttgtaacacaacaattaagaaattttattatgtaataagacaacaactcacgtagttctccgaggacatgg |
40014419 |
T |
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| Q |
212 |
gttaagcgatgaaacctatgctgttagaatcacaagagcatatctaaggcttgtgttgttatttgggaaaagtaggaaaggaaattagaaaaatgctaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40014418 |
gttaagcgatgaaacctatgctgttagaatcacaagagcatatctaaggcttgtgttgttatttgggaaaagaaggaaaggaaattagaaaaatgctaaa |
40014319 |
T |
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| Q |
312 |
gaatatttttagaacactttttaaggaaactagtttagaaatattgtgttggaaa |
366 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40014318 |
gaatatttttagaacactttttaagaaaactagtttagaaatattgtgttggaaa |
40014264 |
T |
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