View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_21 (Length: 320)
Name: NF7508_low_21
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 11811602 - 11811309
Alignment:
| Q |
9 |
gaagaatatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgaaaataaaagtaatgttcatggttttccagctggtagttgtc |
108 |
Q |
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| T |
11811602 |
gaagaaaatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgcaaataaaagtaatcttcatggttttccagcaggtagttgtc |
11811503 |
T |
|
| Q |
109 |
ctactgttggtgtcggaggtcacttcagcagaggtggatttggtaccatatttagaaaatatggtcttgcaactgataatataattgatgctcaaatatt |
208 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11811502 |
ctactgtcggtgtcggaggtcacttcagcggaggtggatttggtaccatatttagaaaatatggtcttgcaactgataatataattgatgctcaaataat |
11811403 |
T |
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| Q |
209 |
agatgttaacggaaacattctaaatagagaaatgatgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagtgatt |
302 |
Q |
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| T |
11811402 |
cgatgttaacggaaacattctaaatagagaaatgatgggtgaagatttattttgggctataagaggaggtggaggatcaagctttggagtgatt |
11811309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 11803858 - 11803565
Alignment:
| Q |
9 |
gaagaatatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgaaaataaaagtaatgttcatggttttccagctggtagttgtc |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |
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| T |
11803858 |
gaagaaaatgcatgggttcaagcaggtgctactcttggagaactctactatgcaattgcaaataaaagtaacgttcatggatttccagctggtagttgtc |
11803759 |
T |
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| Q |
109 |
ctactgttggtgtcggaggtcacttcagcagaggtggatttggtaccatatttagaaaatatggtcttgcaactgataatataattgatgctcaaatatt |
208 |
Q |
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| T |
11803758 |
ctactgttggtgtaggaggtcacttcagtggaggtggatttggtacattatttagaaaatatggtcttgcagctgataatgtaattgatgctcaaatggt |
11803659 |
T |
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| Q |
209 |
agatgttaacggaaacattctaaatagagaaatgatgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagtgatt |
302 |
Q |
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||||||||| ||||| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11803658 |
agatgttaatggaaagatcctaaatagaaaattgatgggtgaggatctattttgggctataagaggaggtggagggtcaagctttggagtgatt |
11803565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 11933665 - 11933810
Alignment:
| Q |
72 |
aaaagtaatgttcatggttttccagctggtagttgtcctactgttggtgtcggaggtcacttcagcagaggtggatttggtaccatatttagaaaatatg |
171 |
Q |
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|||||||| |||||||||||||| || || ||||||||| |||||||| ||||| || || || | ||||||| ||||| ||| | |||||||||| |
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| T |
11933665 |
aaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaatatg |
11933764 |
T |
|
| Q |
172 |
gtcttgcaactgataatataattgatgctcaaatattagatgttaa |
217 |
Q |
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| T |
11933765 |
gtctttcagttgataatattatcgatgcacaaataatcgatgttaa |
11933810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 11946886 - 11947031
Alignment:
| Q |
72 |
aaaagtaatgttcatggttttccagctggtagttgtcctactgttggtgtcggaggtcacttcagcagaggtggatttggtaccatatttagaaaatatg |
171 |
Q |
| |
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|||||||| |||||||||||||| || || ||||||||| |||||||| ||||| || || || | ||||||| ||||| ||| | |||||||||| |
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| T |
11946886 |
aaaagtaaagttcatggttttccggccggcgtttgtcctaccgttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaatatg |
11946985 |
T |
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| Q |
172 |
gtcttgcaactgataatataattgatgctcaaatattagatgttaa |
217 |
Q |
| |
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||||| || ||||||||| || ||||| |||||| | |||||||| |
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| T |
11946986 |
gtctttcagttgataatattatcgatgcacaaataatcgatgttaa |
11947031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 37954139 - 37954272
Alignment:
| Q |
165 |
aaatatggtcttgcaactgataatataattgatgctcaaatattagatgttaacggaaacattctaaatagagaaatgatgggtgaggatctattttggg |
264 |
Q |
| |
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|||||||||||| || ||||||||||| |||| ||||| ||| | ||||| || || | |||| | |||||| ||||||||||||||| ||||||| |
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| T |
37954139 |
aaatatggtctttcagctgataatatacttgacgctcacataattgatgtgaatggtagggttcttgacagagaatcgatgggtgaggatctgttttggg |
37954238 |
T |
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| Q |
265 |
ctataagaggaggtggaggatcaagctttggagt |
298 |
Q |
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|||| ||||||||||||||| ||||||||||||| |
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| T |
37954239 |
ctattagaggaggtggaggagcaagctttggagt |
37954272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 38061971 - 38061844
Alignment:
| Q |
171 |
ggtcttgcaactgataatataattgatgctcaaatattagatgttaacggaaacattctaaatagagaaatgatgggtgaggatctattttgggctataa |
270 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||| | ||||| || || | |||| | |||||| |||||||||||| | ||||||||||| | |
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| T |
38061971 |
ggtcttgcagctgataatattattgatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaggattttttttgggctatta |
38061872 |
T |
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| Q |
271 |
gaggaggtggaggatcaagctttggagt |
298 |
Q |
| |
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|||||||||||||| |||| |||||||| |
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| T |
38061871 |
gaggaggtggaggagcaagttttggagt |
38061844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 38145746 - 38145786
Alignment:
| Q |
243 |
atgggtgaggatctattttgggctataagaggaggtggagg |
283 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||| |
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| T |
38145746 |
atgggagaggatctattttgggctataagaggtggtggagg |
38145786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 38125623 - 38125678
Alignment:
| Q |
243 |
atgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagt |
298 |
Q |
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|||||||| || || ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
38125623 |
atgggtgaagaacttttttgggctattagaggaggtggaggagcaagttttggagt |
38125678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 38129576 - 38129631
Alignment:
| Q |
243 |
atgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagt |
298 |
Q |
| |
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||||| || ||||| ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
38129576 |
atgggggaagatcttttttgggctattagaggaggtggaggagcaagttttggagt |
38129631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 38090621 - 38090667
Alignment:
| Q |
75 |
agtaatgttcatggttttccagctggtagttgtcctactgttggtgt |
121 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
38090621 |
agtagtgttcatggttttccagctggggtttgtcctactgttggtgt |
38090667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 38086393 - 38086445
Alignment:
| Q |
243 |
atgggtgaggatctattttgggctataagaggaggtggaggatcaagctttgg |
295 |
Q |
| |
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|||||||||||| | ||||||||||| ||||| ||||||||| |||| ||||| |
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| T |
38086393 |
atgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttgg |
38086445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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