View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_23 (Length: 304)
Name: NF7508_low_23
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 8817888 - 8817605
Alignment:
| Q |
21 |
aactgtggtgtggccgctctatggtcggagacgtaggcacaattggttgaatatgtgaccgaatatcgcatgttctctgtttgtgttctttgtaattgtt |
120 |
Q |
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| T |
8817888 |
aactgtggtgtggccgctctatggtcggagacgtaggcacaattggttgaatatgtgaccgaatatcgcatgttctctgtttgtgttctttgtaattgtt |
8817789 |
T |
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| Q |
121 |
ttcttttgaactgggatggctattctaccaatttattgaccttgaaatgttaaatttatattgcagaaaatcaggcatgccaagactagtttggaatgca |
220 |
Q |
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| T |
8817788 |
ttcttttgaactgggatggctattctaccaatttattgaccttgaaatgttaaatttatattgcagaaaatcaggcatgccaagactagtttggaatgca |
8817689 |
T |
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| Q |
221 |
gcttctcaaattctgatgttttttggttacaatgcattagctatggccttatcatgattcctatacattggtttgatgttagtt |
304 |
Q |
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| T |
8817688 |
gcttctcaaattctgatgttttttggttacaatgcattagctatggccttatcatgattcctatacattggtttgatgttagtt |
8817605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 8819363 - 8819219
Alignment:
| Q |
148 |
ccaatttattgaccttgaaatgttaaatttatattgcagaaaatcaggcatgccaagactagtttggaatgcagcttctcaaattctgatgttttttggt |
247 |
Q |
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| T |
8819363 |
ccaatttactgaccttgaa-tgttaattttatatggcagaaaatcaggcatgccaaggttagtttggaatgcagcatctcaaattctgatgttttttggt |
8819265 |
T |
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| Q |
248 |
tacaatgcattagctatggccttatcatgattcctatacattggtt |
293 |
Q |
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| T |
8819264 |
tacattgcattggcaatggccttaccagggtcactatacattggtt |
8819219 |
T |
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