View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_25 (Length: 287)
Name: NF7508_low_25
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 29930314 - 29930170
Alignment:
| Q |
141 |
cagtcaacaaagaatcatcatcgctgcagaaatttgaagctcaaaatgt---------cctcctccgttcctcaaaaggccaccgttgtgcgttttcctc |
231 |
Q |
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| T |
29930314 |
cagtcaacaaagaatcatcatcgctgcagaaatttgaagctcaaaatgtgctcctcctcctcctccgttcctcaaaaggccaccgttgtgcgtttccctc |
29930215 |
T |
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| Q |
232 |
tctttctctctttcttccattcccgccaaatttccagtgtttctt |
276 |
Q |
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| T |
29930214 |
tctttctctctttcttccattcccgccaaatttccagtgtttctt |
29930170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 29930423 - 29930378
Alignment:
| Q |
29 |
ctttcatcttcaacaatattcaacctttcaaattctacaatgtaaa |
74 |
Q |
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| T |
29930423 |
ctttcatcttcaacaatattcaacctttcaaattctgcaatgtaaa |
29930378 |
T |
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