View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_26 (Length: 262)
Name: NF7508_low_26
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 24142742 - 24142997
Alignment:
| Q |
1 |
aagaagtttattgttgaaacatagcataatcgttgtgtttataaagtgtataggcaaaaattgatttatgaattattaaacgcttaaataagctattatt |
100 |
Q |
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| T |
24142742 |
aagaattttattgttgaaacatagcattatcgttgtgtatataaagtgtataggcaaaaattgatttatgaattattagacgcttaaataagctattatt |
24142841 |
T |
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| Q |
101 |
tcctttaatatacatgctttgagaagagaatattataggtctaaaaagttacttatgctgaatctcaagatcatgatgacttgatgattcaggcatggca |
200 |
Q |
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| T |
24142842 |
tcctttaatatacatgctttgagaagagaatattataggtctaaaaagttacttatgctgaatctcaagatcatgatgacttgatgattcaggcatggca |
24142941 |
T |
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| Q |
201 |
aattgagatacacaaatgtagaaagttcacaaactcattcacaatgttcatctcac |
256 |
Q |
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| T |
24142942 |
aattgagatgcacaaatgtagaaagttgacaaactcattcacaatgttcatctcac |
24142997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 24149929 - 24149978
Alignment:
| Q |
207 |
gatacacaaatgtagaaagttcacaaactcattcacaatgttcatctcac |
256 |
Q |
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| T |
24149929 |
gatacacaaatgtagaaagttcacaaactcattcacattgttcatttcac |
24149978 |
T |
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