View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_28 (Length: 250)
Name: NF7508_low_28
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 13776872 - 13777106
Alignment:
| Q |
16 |
atacttccactaatcttctgcattttcgttatgaaatggaggagaattcaaaagtgtaaaaaggtatatatattgatttatcttaccccagcatcttggc |
115 |
Q |
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| T |
13776872 |
atacttccactaatcttctgcattttcgttatgaaatggaggagaattcaaaggtgtaaaaaggtatatatattgatatatcttaccccagcatcttggc |
13776971 |
T |
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| Q |
116 |
catctttaagtgcagaatctcctctccatgttactctctggttagaaggcaacacacctgaacgttgtccctcaaaaaacaacaaactttttgtaagtgc |
215 |
Q |
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| T |
13776972 |
catctttaagtgcagaatctcctctccaagttactctctggttagaaggcaacacacctgaacgttgtccctcaaaaaacaacaaactttttgtaagtgc |
13777071 |
T |
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| Q |
216 |
tgttccataatcagcacaagcaacattatgaatca |
250 |
Q |
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| T |
13777072 |
tgttccataatcagcacaagcaacattatgaatca |
13777106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 17214902 - 17214779
Alignment:
| Q |
107 |
catcttggccatctttaagtgcagaatctcctctccatgttactctctggttagaaggcaacacacctgaacgttgtccctcaaaaaacaacaaactttt |
206 |
Q |
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||||||| |||||||||||||||||||| |||||| |||||||||| ||| || |||||| |||| |||||||| |||| |||||||||||||||||| |
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| T |
17214902 |
catcttgaccatctttaagtgcagaatcacctctcaatgttactctttggctattaggcaaaacacatgaacgttaaccctaaaaaaacaacaaactttt |
17214803 |
T |
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| Q |
207 |
tgtaagtgctgttccataatcagc |
230 |
Q |
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| T |
17214802 |
tgtaagtgctgttgcataatcagc |
17214779 |
T |
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