View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7508_low_30 (Length: 231)

Name: NF7508_low_30
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7508_low_30
NF7508_low_30
[»] chr8 (11 HSPs)
chr8 (8-168)||(12172143-12172303)
chr8 (8-168)||(12416571-12416731)
chr8 (129-168)||(42733591-42733630)
chr8 (129-168)||(5601013-5601052)
chr8 (129-168)||(5639568-5639607)
chr8 (129-168)||(10839508-10839547)
chr8 (129-168)||(23754733-23754772)
chr8 (129-168)||(25987813-25987852)
chr8 (129-168)||(26026902-26026941)
chr8 (129-168)||(33100495-33100534)
chr8 (129-166)||(7598714-7598751)
[»] chr5 (10 HSPs)
chr5 (129-165)||(24468315-24468351)
chr5 (129-165)||(13332338-13332374)
chr5 (129-168)||(1293112-1293151)
chr5 (129-168)||(1981896-1981934)
chr5 (129-168)||(10008537-10008576)
chr5 (129-168)||(13089808-13089847)
chr5 (129-168)||(16594402-16594441)
chr5 (129-168)||(34379459-34379498)
chr5 (129-167)||(21155993-21156031)
chr5 (129-163)||(27546332-27546366)
[»] chr4 (10 HSPs)
chr4 (129-168)||(51734659-51734698)
chr4 (129-161)||(7146153-7146185)
chr4 (129-168)||(54128058-54128098)
chr4 (129-168)||(1033286-1033324)
chr4 (129-168)||(15596534-15596572)
chr4 (129-168)||(51255752-51255791)
chr4 (129-168)||(54909329-54909368)
chr4 (129-162)||(2004221-2004254)
chr4 (131-168)||(25840614-25840651)
chr4 (132-168)||(37060326-37060362)
[»] chr2 (5 HSPs)
chr2 (129-168)||(7438574-7438613)
chr2 (129-168)||(15260313-15260352)
chr2 (129-168)||(37468284-37468323)
chr2 (129-168)||(41042260-41042298)
chr2 (129-168)||(43057070-43057109)
[»] chr6 (6 HSPs)
chr6 (129-167)||(23632664-23632702)
chr6 (191-231)||(33785113-33785153)
chr6 (129-168)||(5739790-5739829)
chr6 (129-168)||(24900781-24900820)
chr6 (129-168)||(28982665-28982704)
chr6 (129-166)||(3552182-3552219)
[»] chr7 (8 HSPs)
chr7 (129-165)||(9792772-9792808)
chr7 (129-168)||(12007212-12007251)
chr7 (129-168)||(43159601-43159640)
chr7 (129-168)||(47448832-47448871)
chr7 (129-163)||(41750121-41750155)
chr7 (131-168)||(21103020-21103057)
chr7 (129-165)||(21858888-21858923)
chr7 (132-168)||(31445326-31445362)
[»] scaffold0432 (1 HSPs)
scaffold0432 (129-168)||(6546-6585)
[»] chr3 (10 HSPs)
chr3 (129-168)||(20380784-20380822)
chr3 (129-168)||(23553615-23553654)
chr3 (129-168)||(31425540-31425579)
chr3 (129-168)||(31931045-31931084)
chr3 (129-168)||(33389014-33389053)
chr3 (129-168)||(37143127-37143166)
chr3 (129-160)||(37788352-37788383)
chr3 (129-168)||(45293055-45293094)
chr3 (129-168)||(52963342-52963381)
chr3 (129-162)||(41448208-41448241)
[»] chr1 (10 HSPs)
chr1 (129-168)||(649774-649813)
chr1 (129-168)||(9566987-9567026)
chr1 (129-168)||(18982525-18982564)
chr1 (129-168)||(19947767-19947806)
chr1 (129-168)||(33466070-33466109)
chr1 (129-168)||(36775112-36775151)
chr1 (129-168)||(42824460-42824499)
chr1 (129-168)||(48983694-48983733)
chr1 (129-168)||(49020430-49020469)
chr1 (129-165)||(36775078-36775114)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 12172303 - 12172143
Alignment:
Q  8 gcagaacctgtgattgttagttgatttttcaagtcctttcaaagaaaccaaagaaccagaaaatataactcaccagttacggtcctttatggcttcaggc 107  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  12172303 gcagaacctgtacttgttagttaatttttcaagtcctttcaaagaaaccaaaaaaccagaaaatataactcaccagttacagtcctttatggcttcaggc 12172204  T
Q  108 atcctatagnnnnnnnnnnnntgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||| || |            |||||||||||||||||||||||||||| |||||||||||    
T  12172203 atcccattgaaaaaagaaaaatgatatttgaacaaccatttttaaacaaattttgtgacaa 12172143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 12416731 - 12416571
Alignment:
Q  8 gcagaacctgtgattgttagttgatttttcaagtcctttcaaagaaaccaaagaaccagaaaatataactcaccagttacggtcctttatggcttcaggc 107  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  12416731 gcagaacctgtacttgttagttaatttttcaagtcctttcaaagaaaccaaaaaaccagaaaatataactcaccagttacagtcctttatggcttcaggc 12416632  T
Q  108 atcctatagnnnnnnnnnnnntgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||| || |            |||||||||||||||||||||||||||| |||||||||||    
T  12416631 atcccattgaaaaaagaaaaatgatatttgaacaaccatttttaaacaaattttgtgacaa 12416571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 42733630 - 42733591
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  42733630 tgatatttgaacaaccatttttaaacaatttttgtgacaa 42733591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 5601052 - 5601013
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  5601052 tgatatttgaacaaccattttttgacaacttttgtgacaa 5601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 5639568 - 5639607
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  5639568 tgatatttgaacaaccattttttgacaacttttgtgacaa 5639607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 10839547 - 10839508
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  10839547 tgatatttgaacaaccaatttttaacaacttttgtgacaa 10839508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 23754772 - 23754733
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  23754772 tgatatttgaacaaccattttttaataacttttgtgacaa 23754733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 25987852 - 25987813
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  25987852 tgatatttgaacaaccatttttttacaacttttgtgacaa 25987813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 26026902 - 26026941
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  26026902 tgatatttgaacaaccattttttgacaacttttgtgacaa 26026941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 33100534 - 33100495
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  33100534 tgatatttgaacaaccattttataacaacttttgtgacaa 33100495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 7598714 - 7598751
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgac 166  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  7598714 tgatatttgaacaaccattttttgacaacttttgtgac 7598751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 24468351 - 24468315
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtga 165  Q
    |||||||||||||||||||||||||||||||||||||    
T  24468351 tgatatttgaacaaccatttttaaacaacttttgtga 24468315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 13332338 - 13332374
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtga 165  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13332338 tgatatttgaacaaccatttttaaataacttttgtga 13332374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 1293151 - 1293112
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  1293151 tgatatttgtacaaccattttttaacaacttttgtgacaa 1293112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 1981896 - 1981934
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  1981896 tgatatttgaacaaccatttttaaac-acttttgtgacaa 1981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 10008576 - 10008537
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  10008576 tgatattcgaacaatcatttttaaacaacttttgtgacaa 10008537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 13089847 - 13089808
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  13089847 tgatatttgaacaaccattttttgacaacttttgtgacaa 13089808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 16594441 - 16594402
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  16594441 tgatatttgaacatccattttttaacaacttttgtgacaa 16594402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 34379459 - 34379498
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  34379459 tgatatttgaacaaccatttttaaataatttttgtgacaa 34379498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 21155993 - 21156031
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgaca 167  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  21155993 tgatatttgaacaaccattttttgacaacttttgtgaca 21156031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 27546332 - 27546366
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgt 163  Q
    |||| ||||||||||||||||||||||||||||||    
T  27546332 tgatgtttgaacaaccatttttaaacaacttttgt 27546366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 51734698 - 51734659
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  51734698 tgatatttgaacaaccacttttaaacaacttttgtgacaa 51734659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 7146185 - 7146153
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaactttt 161  Q
    |||||||||||||||||||||||||||||||||    
T  7146185 tgatatttgaacaaccatttttaaacaactttt 7146153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 54128058 - 54128098
Alignment:
Q  129 tgatatttgaa-caaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  54128058 tgatatttgaaacaaccatttttaaacaacttttgtgacaa 54128098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 1033324 - 1033286
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  1033324 tgatatttgaacaaccatttt-aaacaacttttgtgacaa 1033286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 15596572 - 15596534
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15596572 tgatatttgaacaaccatttt-aaacaacttttgtgacaa 15596534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 51255752 - 51255791
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  51255752 tgatatttgaacaaccattttttgacaacttttgtgacaa 51255791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 54909329 - 54909368
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  54909329 tgatatttgaacaaccattattaaacaatttttgtgacaa 54909368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 2004254 - 2004221
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttg 162  Q
    |||||||||||||||||||||| |||||||||||    
T  2004254 tgatatttgaacaaccattttttaacaacttttg 2004221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 25840614 - 25840651
Alignment:
Q  131 atatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  25840614 atatttgtacaaccatttttaaacaacttttatgacaa 25840651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 37060326 - 37060362
Alignment:
Q  132 tatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||  ||||||||||||||||    
T  37060326 tatttgaacaaccattttttgacaacttttgtgacaa 37060362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 7438574 - 7438613
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  7438574 tgatatttgaacaaccatttttaaacaacttttatgacaa 7438613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 15260313 - 15260352
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  15260313 tgatatttgaacaaccacttttagacaacttttgtgacaa 15260352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 37468323 - 37468284
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  37468323 tgatatttgaagaatcatttttaaacaacttttgtgacaa 37468284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 41042260 - 41042298
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  41042260 tgatatttgaacaaccattttt-aacaacttttgtgacaa 41042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 43057070 - 43057109
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  43057070 tgatatttgaacaaccactttttaacaacttttgtgacaa 43057109  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 23632702 - 23632664
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgaca 167  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  23632702 tgatatttgaacaaccacttttaaacaacttttgtgaca 23632664  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 33785153 - 33785113
Alignment:
Q  191 cattgtcatacctagttagttggttggtttgattgcgattt 231  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  33785153 cattgtcatacctagttcgttggttggtttgatcgcgattt 33785113  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 5739829 - 5739790
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  5739829 tgatatttgaacaactattttttaacaacttttgtgacaa 5739790  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 24900781 - 24900820
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  24900781 tgatatttgaacaaccattttttgacaacttttgtgacaa 24900820  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 28982704 - 28982665
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  28982704 tgatatttgaacatccattttttaacaacttttgtgacaa 28982665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 3552219 - 3552182
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgac 166  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  3552219 tgatatttgtacaaccattttttaacaacttttgtgac 3552182  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 9792772 - 9792808
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtga 165  Q
    ||||||||||||||||| |||||||||||||||||||    
T  9792772 tgatatttgaacaaccacttttaaacaacttttgtga 9792808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 12007251 - 12007212
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  12007251 tgatatttgaacaaccattttttgacaacttttgtgacaa 12007212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 43159640 - 43159601
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  43159640 tgatatttgaacaaccattttttaacaatttttgtgacaa 43159601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 47448832 - 47448871
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  47448832 tgatatttgaacaaccattttttgacaacttttgtgacaa 47448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 41750121 - 41750155
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgt 163  Q
    |||||||| ||||||||||||||||||||||||||    
T  41750121 tgatatttaaacaaccatttttaaacaacttttgt 41750155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 21103020 - 21103057
Alignment:
Q  131 atatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  21103020 atatttgaacaactatttttaaacaatttttgtgacaa 21103057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 21858923 - 21858888
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtga 165  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21858923 tgatatttgaacaacca-ttttaaacaacttttgtga 21858888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 31445326 - 31445362
Alignment:
Q  132 tatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||||||||  ||||||||||||||||    
T  31445326 tatttgaacaaccattttttgacaacttttgtgacaa 31445362  T

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Target: scaffold0432 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 6585 - 6546
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  6585 tgatatttgaacaatcattttttaacaacttttgtgacaa 6546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 20380784 - 20380822
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  20380784 tgatatttgaacaaccatttt-aaacaacttttgtgacaa 20380822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 23553654 - 23553615
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  23553654 tgatatttgaacaactacttttaaacaacttttgtgacaa 23553615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 31425540 - 31425579
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  31425540 tgatatttgaacatccattttttaacaacttttgtgacaa 31425579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 31931084 - 31931045
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  31931084 tgatatttgaacatccattttttaacaacttttgtgacaa 31931045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 33389014 - 33389053
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  33389014 tgatatttgaacaaccacttttaaacaatttttgtgacaa 33389053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 37143127 - 37143166
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  37143127 tgatatttgaacatccattttttaacaacttttgtgacaa 37143166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 37788352 - 37788383
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttt 160  Q
    ||||||||||||||||||||||||||||||||    
T  37788352 tgatatttgaacaaccatttttaaacaacttt 37788383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 45293094 - 45293055
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  45293094 tgatatttaaacaactatttttaaacaacttttgtgacaa 45293055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 52963381 - 52963342
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  52963381 tgatatttgtacaaccattttttaacaacttttgtgacaa 52963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 41448241 - 41448208
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttg 162  Q
    ||||||||| ||||||||||||||||||||||||    
T  41448241 tgatatttgtacaaccatttttaaacaacttttg 41448208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 649774 - 649813
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  649774 tgatatttgaacaaccatttttttacaacttttgtgacaa 649813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 9567026 - 9566987
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  9567026 tgatatttgaacaaccattttttgacaacttttgtgacaa 9566987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 18982525 - 18982564
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  18982525 tgatatttgaacatccattttttaacaacttttgtgacaa 18982564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 19947806 - 19947767
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  19947806 tgatatttgaacaaccattttttgacaacttttgtgacaa 19947767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 33466070 - 33466109
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  33466070 tgatatttgaacaactatttttaaacaacttatgtgacaa 33466109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 36775112 - 36775151
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  36775112 tgatatttgaacatccattttttaacaacttttgtgacaa 36775151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 42824460 - 42824499
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  42824460 tgatatttgatcaaccatttttaaactacttttgtgacaa 42824499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 48983733 - 48983694
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  48983733 tgatatttgaacaaccattttttgacaacttttgtgacaa 48983694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 49020469 - 49020430
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtgacaa 168  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  49020469 tgatatttgtacaaccattttttaacaacttttgtgacaa 49020430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 36775078 - 36775114
Alignment:
Q  129 tgatatttgaacaaccatttttaaacaacttttgtga 165  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  36775078 tgatatttgaacatccattttttaacaacttttgtga 36775114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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