View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_4 (Length: 691)
Name: NF7508_low_4
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 252 - 691
Target Start/End: Complemental strand, 2185749 - 2185310
Alignment:
| Q |
252 |
tattaaataaaaattataccaaaggaaaagcataagtctagatgttctggtaggtagtgtcatgcatttaactagaaatgaagataaggtactcattagc |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2185749 |
tattaaataaaaattataccaaaggaaaagcataagtctagatgttctggtaggtagtgtcatgcatttaactagaaatgaagataaggtactcattagc |
2185650 |
T |
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| Q |
352 |
acttagcagacatatttaaagaaataagacaatccacaaagctctttatactaaaactgttgggaggccacatgttagcaaaacttgcatgcaattcttg |
451 |
Q |
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| T |
2185649 |
acttagcagacatatttaaagaaataagacaatccacaaagttctttatactaaaactgttgggaggccacatgttagcaaaacttgcatgcaattcttg |
2185550 |
T |
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| Q |
452 |
caataacaaataaagtttcttaatactacgttttgaaattgactttcttacatgcattccaggattatcatccaagatttggcacgaatacaaacacata |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2185549 |
caataacaaataaagtttcttaatactacgttttgaaattgactttcttacatgcattccaggattatcatccaagatttggcacgaatacaaacacata |
2185450 |
T |
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| Q |
552 |
ttaatatgaaaaatgcgaacccaacaagagaatataagagagattcatctggtaaaggcattaaagtgagaaatacagctttgcatataaaatagaagtt |
651 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2185449 |
tttatatgaaaaatgcgaacccaacgagagaatataagagagattcatctggtaaaggcattacagtgagaaatacagctttgcatataaaatagaagtt |
2185350 |
T |
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| Q |
652 |
agtagcacaacctgtactcaacaaatatatgaatagacat |
691 |
Q |
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| T |
2185349 |
agtagcacaacctgtactcaacaaatatatgaatagacat |
2185310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 2186017 - 2185772
Alignment:
| Q |
8 |
cgaagaatattggtaaaaagaggtgaaactttagaaaaatatttttaaaagtgagtttatctctgaggcaaataaatatatatacatctcaagttttagt |
107 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2186017 |
cgaaaaatattggtacaaagaggtgaaactttagaaaaatatttttaaaagtgagtttatctccgaggcaaataaatatatatacatctcaagttttagt |
2185918 |
T |
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| Q |
108 |
aagttaagattcaaatgtacttaaaattaaatccga-aaaatatatgcccttacttgctaattttagacataagttcattgtaaaggaatctaattcaat |
206 |
Q |
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||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2185917 |
aagttaagattcaaatgtacttaaaattaaatctaagagcacgtatgcccttacttgctaattttagacatacgttcattgtaaaggaatctaattcaat |
2185818 |
T |
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| Q |
207 |
ttggttgagcctgtgatttgtctaggctttcacaagaggaagtgtt |
252 |
Q |
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| T |
2185817 |
ttggttgagcctgtgatttgtctaggctttcacaagaggaagtgtt |
2185772 |
T |
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