View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_5 (Length: 603)
Name: NF7508_low_5
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Original strand, 13282621 - 13283190
Alignment:
| Q |
16 |
ataattgacaagatagagaagcatatacccacctcnnnnnnnnnnnnnnnccacctagtgttcaacatctcaaactctattattcaaatggaacaagatc |
115 |
Q |
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| T |
13282621 |
ataattgacaagatagagaagcatatacccacctcaaaaacaaaaaaaaaccacctagtgttcaacatctcaaactctattattcaaatggaacaagatc |
13282720 |
T |
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| Q |
116 |
tcacaatcaaaaaagtgcaaattagaccctcttacatctccaattgtatcatgtctccaccttgtttccctgtcccaaatgagttccaatactctaaaat |
215 |
Q |
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| T |
13282721 |
tcacaatcaaaaaagtgcaaattagaccctcttacatctccaattgtatcatgtctccaccttgtttccctgtcccaaatgagttccaatactctaaaat |
13282820 |
T |
|
| Q |
216 |
ccattatagtcctataaagagaaagtggaggtggaggaacctacttagaaaattcttgagggagagaagaatcttgggtgggcacaagcaaatttctttt |
315 |
Q |
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| T |
13282821 |
ccattatagtcctataaagagaaagtggaggtggaggaacctacttagaaaattcttgagggagagaagaatcttgggtgggcacaagcaaatttctttt |
13282920 |
T |
|
| Q |
316 |
caatatgatcctattagctactcacagaattttgatgagggttgtcatcttgatgatgaacctagacgcctttcccatgtgtgccaagatgttaggtgcg |
415 |
Q |
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| T |
13282921 |
caatatgatcctattagctactcacagaattttgatgagggttgtcatcttgatgatgaaccaagacgcctttcccatgtgtgccaagatgttaggtgcg |
13283020 |
T |
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| Q |
416 |
atatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcagtattttattcttcactagagttttatactcgatgtttcatcc |
515 |
Q |
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| T |
13283021 |
atatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcactattttgttcttcactagagttttatactcgatgtttcatcc |
13283120 |
T |
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| Q |
516 |
ttcaaccgagctcgtatcacttgagttactcaattcttgttttacattacttcattctgtatgcatcttt |
585 |
Q |
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| T |
13283121 |
ttcaaccgagctcgtatcacttgagttactcaattcttgttttacattacttgattctgtatgcatcttt |
13283190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 26533892 - 26533843
Alignment:
| Q |
430 |
tatttttatagatacaaatgttagtatattagtcgttatgtcagtatttt |
479 |
Q |
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||||||| || || ||||||||||||||||||| ||||||| |||||||| |
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| T |
26533892 |
tatttttttatatccaaatgttagtatattagttgttatgttagtatttt |
26533843 |
T |
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