View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7508_low_9 (Length: 464)
Name: NF7508_low_9
Description: NF7508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7508_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 52001653 - 52001207
Alignment:
| Q |
1 |
cccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001653 |
cccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatca |
52001554 |
T |
|
| Q |
101 |
tgttgatggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctctt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001553 |
tgttgatggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctctt |
52001454 |
T |
|
| Q |
201 |
gaactacttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaatt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001453 |
gaactacttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaatt |
52001354 |
T |
|
| Q |
301 |
ccatattagaggtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcctattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001353 |
ccatattagaggtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcctattt |
52001254 |
T |
|
| Q |
401 |
gaattttgtcattcaaatttgggtcgtgtgaagttacaaatcacagg |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001253 |
gaattttgtcattcaaatttgggtcgtgtgaagttacaaatcacagg |
52001207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 55 - 439
Target Start/End: Original strand, 51988034 - 51988419
Alignment:
| Q |
55 |
gtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggct |
154 |
Q |
| |
|
||||||||||| ||| |||| ||| ||||| |||||||| || |||| ||||| |||||||||||||| |||||||||| | ||||| |||||||| |
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| T |
51988034 |
gtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatgccattgcttcgcttgatagtgtttctgaagagctaaagcaaaggct |
51988133 |
T |
|
| Q |
155 |
tagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagtggatttccaaatgtgattcggcttaaagattgctcttgg |
254 |
Q |
| |
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|||| ||||| | |||||| | |||||||||| ||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||| |
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| T |
51988134 |
tagcacgttgttatgtgatctgggcaaaatgaatggtcactttcttgaactacttcttagtgggttttcaaatgtgattcggcttaaagattgcttctgg |
51988233 |
T |
|
| Q |
255 |
atgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtatgtttattgaatttaattgtttcacatatataatacttag |
354 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||| || |||| ||||| | |
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| T |
51988234 |
ttgacagaggaagaatttataaaatattttggaacattggacacttccatattagaggtatgttcattcaatttaattgttcagcagatattgtacttgg |
51988333 |
T |
|
| Q |
355 |
tgtttcttgtagttttgctgcaattccacatttttatttcc-tatttgaattttgtcattcaaatttgggtcgtgtgaagttacaa |
439 |
Q |
| |
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| ||||| || ||||| | ||||||||| ||||| ||||| |||| ||||||| |||| ||||||||| ||||||||| |||| |
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| T |
51988334 |
tttttctagtgattttgttacaattccacctttttctttccaaatttcaattttgacatttgaatttgggttgtgtgaagtcacaa |
51988419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 30 - 317
Target Start/End: Complemental strand, 52011489 - 52011202
Alignment:
| Q |
30 |
gaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatggacttgcttcgcttgatggtg |
129 |
Q |
| |
|
|||||||| ||||||| ||| || | |||||||| ||| |||||||||||||||||||||||| || |||| ||||||| | | |||||||||||||| |
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|
| T |
52011489 |
gaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatggaatggtttcgcttgatggtg |
52011390 |
T |
|
| Q |
130 |
tttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagtggatttccaaatgt |
229 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||| | |||||||| |||||||||||| || || ||||||||||||||| ||||| ||||| | | |
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| T |
52011389 |
tttcggatgagctcaaacaaaggcttagcgcgttggtatgtgattcgagaaaaatgaattgtcgctttcttgaactacttctgagtgggtttcctactca |
52011290 |
T |
|
| Q |
230 |
gattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtatgt |
317 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||| || |||| |||||||| |||||||| ||||||||||||||||||| |
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|
| T |
52011289 |
tattcggcttaaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttggacacttccatattagaggtatgt |
52011202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 11749327 - 11749011
Alignment:
| Q |
1 |
cccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatca |
100 |
Q |
| |
|
|||||| ||||||| | ||| |||||| |||||||| |||| |||| || |||||||||||| || |||| ||||| ||||| ||||| ||||| |
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| T |
11749327 |
cccttatttgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatca |
11749228 |
T |
|
| Q |
101 |
tgttgatggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctctt |
200 |
Q |
| |
|
|||||||||| | | ||| ||||||||| || | |||| | |||||||||||| | ||||||||||| |||||| ||||||||||||||| || |||| |
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|
| T |
11749227 |
tgttgatggattggtttcccttgatggtattccggatgagttcaaacaaaggctttgtgcgttgctttgcgattcaggaaaaatgaatgctcgctttctt |
11749128 |
T |
|
| Q |
201 |
gaactacttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaatt |
300 |
Q |
| |
|
||| ||||||||||||| | ||| | | || |||||||||| ||||| ||| ||||| |||||||||| || |||||||||| |||||||| || |
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| T |
11749127 |
gaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacataggaagaattcactgcatattttggagtgttggacactt |
11749028 |
T |
|
| Q |
301 |
ccatattagaggtatgt |
317 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
11749027 |
ccacggtagaggtatgt |
11749011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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