View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7509_low_1 (Length: 772)

Name: NF7509_low_1
Description: NF7509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7509_low_1
NF7509_low_1
[»] chr2 (1 HSPs)
chr2 (17-772)||(37136073-37136831)


Alignment Details
Target: chr2 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 17 - 772
Target Start/End: Original strand, 37136073 - 37136831
Alignment:
Q  17 atcaaattgccatttttgtttctttctttcaaatatgtgccctactttctaaaagctctcatttaaggctaaaatactcatctttatgtcttttgtgtac 116  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37136073 atcaaattgccatttttgtttgtttctttcaaatatgtgccctactttctaaaagctctcatttaaggttaaaatactcatctttatgtcttttgtgtac 37136172  T
Q  117 tttgcttgatacaaattatttgttgagaagtttgcttggtagaacttgtttattgtttctcgataaagtattaagagttcaattcgatctttactgcaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  37136173 tttgcttgatacaaattatttgttgagaagtttgcttggtagaacttgtttattgtttctcggtaaagtattaagagttcaattcgatctttactgcaaa 37136272  T
Q  217 caaattaactattaacatttgtttatnnnnnnntctttttccgagcacctgaaaatgttttgttattttttcagttgcccggaagaacagataacgaaat 316  Q
    ||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37136273 caaattaactattaacatttgtttataaaaaaatctttctccgagcacctgaaaatgttttgttgttttttcagttgcccggaagaacagataacgaaat 37136372  T
Q  317 caaaaacttttggaacacaagaatgaaaaggtgtcaaagagccggcttacctctttatcctccagaaatccaagcagaagctattgcatacaatgataaa 416  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136373 caaaaacttttggaacacaagaatgaaaaggcgtcaaagagccggcttacctctttatcctccagaaatccaagcagaagctattgcatacaatgataaa 37136472  T
Q  417 ctattgcaactacaacatcaacctttatcttcttcatcattatcattttctttactcttatcttcttgttaccctaagaagattgatgatccaaaccatt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136473 ctattgcaactacaacatcaacctttatcttcttcatcattatcattttctttactcttatcttcttgttaccctaagaagattgatgatccaaaccatt 37136572  T
Q  517 atgattataatcttctagagaacaactctggttctgctaataatcacaacaccaatccatgtccacaattcaacttttccaatgatgaaaacattgagat 616  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136573 atgattataatcttctagagaacaactctggttctgctaacaatcacaacaccaatccatgtccacaattcaacttttccaatgatgaaaacattgagat 37136672  T
Q  617 taatgaaactcttgctttgcaaaaatcaccttcactttcaccttatccatct---tcatcaaatcttttcaaccagaattttactcctccaagtgattca 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  37136673 taatgaaactcttgctttgcaaaaatcaccttcactttcaccttatccatcttcatcatcaaatcttttcaaccagaattttactcctccaagtgattca 37136772  T
Q  714 catgattaccaatactctgaaaatttgagctttgaacatcatggattcaatgcaggatc 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136773 catgattaccaatactctgaaaatttgagctttgaacatcatggattcaatgcaggatc 37136831  T

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