View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7509_low_2 (Length: 206)
Name: NF7509_low_2
Description: NF7509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7509_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 11492299 - 11492477
Alignment:
| Q |
20 |
ttaaacacatgcaaatctttatgttttgaaatttctgaaaatttatggggattactcatcaaaccattttgtaatatcagagaaataatcttgtttctat |
119 |
Q |
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| T |
11492299 |
ttaaacacacgcaaatctttatgttttgaaatttctgaaaatttatggggattactcatcaaaccattttgtaatataagagaaataatcttgtttttat |
11492398 |
T |
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| Q |
120 |
caaaaacaaaaacat----atacctctaatcattggtttccggcatccaaagggatcatccacgatatcttcatctcac |
194 |
Q |
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| T |
11492399 |
caaaaacaaaaacatatacatacctctaatcattggttgccgacatccaaagggatcatccacgatatcttcatctcac |
11492477 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 39343066 - 39343024
Alignment:
| Q |
143 |
aatcattggtttccggcatccaaagggatcatccacgatatct |
185 |
Q |
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| T |
39343066 |
aatcactggttgccggcatccaaagggatcatccatgatatct |
39343024 |
T |
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