View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7510_low_3 (Length: 282)
Name: NF7510_low_3
Description: NF7510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7510_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 6314685 - 6314443
Alignment:
| Q |
9 |
agcagagacatcaaacaagcaaacaaaagtctcaagcacatactaaaaattaaaactataccatctcgtaatagagaggaccataacatagattaatagt |
108 |
Q |
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| T |
6314685 |
agcagagacatcaaacaagcaaacaaaagtctcaagcacatactaaaaattaaaactataccatctcgtaatagagaggaccataacatagattaatagt |
6314586 |
T |
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| Q |
109 |
catatgttttttaatatacaagatcctcatttccctcatttctaaggtgagtggagcgcatacttgcatctctatagagaaattaatgatatgagcataa |
208 |
Q |
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| T |
6314585 |
catatgttttttaatatacaagat---------cgtcatttctaaggtgagtggagcgcatacttacatctctatagagaaattaatgatatgaacataa |
6314495 |
T |
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| Q |
209 |
taactagtactaacttgagctttcaaaatgaactgagaaacttagaaggaca |
260 |
Q |
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| T |
6314494 |
taactagtactaacttgagctttcaaaatgaacagagatacttagaaggaca |
6314443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 4695299 - 4695343
Alignment:
| Q |
171 |
cttgcatctctatagagaaattaatgatatgagcataataactag |
215 |
Q |
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| T |
4695299 |
cttgtatctctatagaggaattaatgacatgaccataataactag |
4695343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 12366352 - 12366282
Alignment:
| Q |
143 |
ctcatttctaaggtgagtggagcgcatacttgcatctctatagagaaattaatgatatgagcataataact |
213 |
Q |
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| T |
12366352 |
ctcatttctaaggcgagtgtagagcatacttgcatctctatagagggacttatgatatgaacataataact |
12366282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 12346195 - 12346124
Alignment:
| Q |
70 |
catctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatatacaagatcctcatttc |
141 |
Q |
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| T |
12346195 |
catctcataatagagaggaccatagcatggatcactagtcagatgttttctgatacacaagatcctcatttc |
12346124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 18904147 - 18904199
Alignment:
| Q |
87 |
gaccataacatagattaatagtcatatgttttttaatatacaagatcctcatt |
139 |
Q |
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| T |
18904147 |
gaccacaacatggattaatagtcaaatgtttattgacatacaagatcctcatt |
18904199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 36680985 - 36680941
Alignment:
| Q |
171 |
cttgcatctctatagagaaattaatgatatgagcataataactag |
215 |
Q |
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| T |
36680985 |
cttgcatctctatagaggaattaaagacatgaacataataactag |
36680941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 36682483 - 36682447
Alignment:
| Q |
27 |
gcaaacaaaagtctcaagcacatactaaaaattaaaa |
63 |
Q |
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| T |
36682483 |
gcaaataaaagtctcaagcacatactaacaattaaaa |
36682447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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