View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7510_low_4 (Length: 232)
Name: NF7510_low_4
Description: NF7510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7510_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 38306744 - 38306540
Alignment:
| Q |
19 |
ataaagactcggagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaa |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38306744 |
ataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaa |
38306645 |
T |
|
| Q |
119 |
tagcatgtacaactttgtttttactttttgcaacttccgttcacaagttgatggat-gagttttgagtaacaatcagccaaccttgagaatttcatccgt |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38306644 |
tagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttgagtaacaatcagccaaccttgagaatttcatccgt |
38306545 |
T |
|
| Q |
218 |
gggtc |
222 |
Q |
| |
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||||| |
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| T |
38306544 |
gggtc |
38306540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 38314083 - 38313876
Alignment:
| Q |
22 |
aagactcggagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaatag |
121 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||| |||||| ||||||| |
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| T |
38314083 |
aagactcagagttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtacttttgctagagtacttggcaaatag |
38313984 |
T |
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| Q |
122 |
catgtacaactttgtttttactttttgcaacttccgttcacaagttgatggat-gagttttgagtaacaatcagccaaccttgagaatttcatccgtggg |
220 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||| |
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| T |
38313983 |
catgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaacaagcagccaatcttgaaaatttcatccgtggg |
38313884 |
T |
|
| Q |
221 |
tcaagaac |
228 |
Q |
| |
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|||||||| |
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| T |
38313883 |
tcaagaac |
38313876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 38326342 - 38326128
Alignment:
| Q |
19 |
ataaagactcggagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaa |
118 |
Q |
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||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||| |||| |
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| T |
38326342 |
ataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaagaagtacgttggctagaatacttgccaaa |
38326243 |
T |
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| Q |
119 |
tagcatgtacaactttgtttttactttttgcaacttccgttcacaagttgatggat-gagttttgagtaacaatcagccaaccttgagaatttcatccgt |
217 |
Q |
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||||||||||||||| || |||||| ||||||||||| |||||| ||||||| || |||||||||||||||| |||||| |||| ||||| |||||| |
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| T |
38326242 |
tagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaataagccaatgttgaaaatttaatccgt |
38326143 |
T |
|
| Q |
218 |
gggtcaagaaccgct |
232 |
Q |
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||||||||||||||| |
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| T |
38326142 |
gggtcaagaaccgct |
38326128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 38317483 - 38317287
Alignment:
| Q |
33 |
ttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaatagcatgtacaact |
132 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38317483 |
ttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaagaagtgcttttgctagaatacttgtcaaatagcatgtacaact |
38317384 |
T |
|
| Q |
133 |
ttgtttttactttttgcaacttccgttcacaagttgatggat-gagttttgagtaacaatcagccaaccttgagaatttcatccgtgggtcaagaac |
228 |
Q |
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|| | |||||| |||||||||| | || || |||||||||| |||||||||||||||| ||||||| | || || |||||||||||||||||||| |
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| T |
38317383 |
ttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttgagtaacaataagccaacgtcgaaaacttcatccgtgggtcaagaac |
38317287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 38321578 - 38321378
Alignment:
| Q |
33 |
ttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaatagcatgtacaact |
132 |
Q |
| |
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|||||||||||||||||| ||||||||| | |||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38321578 |
ttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatacttttgctagaatacttgtcaaatagcatgtacaact |
38321479 |
T |
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| Q |
133 |
ttgtttttactttttgcaacttccgttcacaagttgatggat-gagttttgagtaacaatcagccaaccttgagaatttcatccgtgggtcaagaaccgc |
231 |
Q |
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| | ||||||| ||||||||||| |||||| | || || |||||||||||||||| |||||| | || || ||||||||||||||||||||||| |
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| T |
38321478 |
tactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgc |
38321379 |
T |
|
| Q |
232 |
t |
232 |
Q |
| |
|
| |
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| T |
38321378 |
t |
38321378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 38300833 - 38300633
Alignment:
| Q |
33 |
ttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaatagcatgtacaact |
132 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||| |||| | | || |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300833 |
ttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatacttgtcaaatagcatgtacaact |
38300734 |
T |
|
| Q |
133 |
ttgtttttactttttgcaacttccgttcacaagttgatggat-gagttttgagtaacaatcagccaaccttgagaatttcatccgtgggtcaagaaccgc |
231 |
Q |
| |
|
| | ||||||| ||||||||||| ||||| ||||||| || |||||||||||||||| |||||| |||| | || |||| ||||||||||||||| |
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| T |
38300733 |
tgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagccaatgttgaaagcttaatccttgggtcaagaaccgc |
38300634 |
T |
|
| Q |
232 |
t |
232 |
Q |
| |
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| |
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| T |
38300633 |
t |
38300633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 38309480 - 38309280
Alignment:
| Q |
33 |
ttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtacttttgctagaatacttgtcaaatagcatgtacaact |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
38309480 |
ttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagtacttttgcaagaattcttgtgaaatagcatgtacaact |
38309381 |
T |
|
| Q |
133 |
ttgtttttactttttgcaacttccgttcacaagttgatgga-tgagttttgagtaacaatcagccaaccttgagaatttcatccgtgggtcaagaaccgc |
231 |
Q |
| |
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| | ||||||| |||||||||| ||| || ||||||| | | |||||||||||||||| |||||| | || | || |||| ||||||||||||||| |
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| T |
38309380 |
tgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataagccaatgtggaaagctttatccttgggtcaagaaccgc |
38309281 |
T |
|
| Q |
232 |
t |
232 |
Q |
| |
|
| |
|
|
| T |
38309280 |
t |
38309280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 38849928 - 38850062
Alignment:
| Q |
99 |
ttgctagaatacttgtcaaatagcatgtacaactttgtttttactttttgcaacttccgttcacaagttgatggatg-agttttgagtaacaatcagcca |
197 |
Q |
| |
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|||| ||||| ||| |||||||||||| |||||||| | ||||||| || | ||||| |||||| ||||||| || |||||||| ||||||| ||||| |
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| T |
38849928 |
ttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatccagttttgaataacaataagcca |
38850027 |
T |
|
| Q |
198 |
accttgagaatttcatccgtgggtcaagaaccgct |
232 |
Q |
| |
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| ||| || |||||||||||||||||||||||| |
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|
| T |
38850028 |
aggttgtaaacttcatccgtgggtcaagaaccgct |
38850062 |
T |
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