View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7510_low_5 (Length: 220)

Name: NF7510_low_5
Description: NF7510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7510_low_5
NF7510_low_5
[»] chr5 (1 HSPs)
chr5 (1-58)||(6231363-6231420)
[»] chr7 (1 HSPs)
chr7 (1-57)||(41806602-41806658)
[»] chr2 (1 HSPs)
chr2 (1-60)||(6091035-6091094)
[»] chr3 (2 HSPs)
chr3 (15-59)||(5449940-5449984)
chr3 (1-51)||(48158146-48158196)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-57)||(31083-31139)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-57)||(5394-5450)
[»] chr4 (1 HSPs)
chr4 (1-57)||(14834249-14834305)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6231420 - 6231363
Alignment:
Q  1 aaaaagaggtctcatactgtagaagatttaagaaggtctcccaccctaaacggcacca 58  Q
    ||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||    
T  6231420 aaaaagaggtctcctacagtaggagatctaagaaggtctcccaccctaaacggcacca 6231363  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41806658 - 41806602
Alignment:
Q  1 aaaaagaggtctcatactgtagaagatttaagaaggtctcccaccctaaacggcacc 57  Q
    ||||||||||||| ||| |||| |||  |||||||||||||||||||||||||||||    
T  41806658 aaaaagaggtctcctacggtaggagacctaagaaggtctcccaccctaaacggcacc 41806602  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6091035 - 6091094
Alignment:
Q  1 aaaaagaggtctcatactgtagaagatttaagaaggtctcccaccctaaacggcaccata 60  Q
    |||||||| |||| |||| ||| |||| ||| ||||||||||||||||||||||||||||    
T  6091035 aaaaagagatctcctactctaggagatctaaaaaggtctcccaccctaaacggcaccata 6091094  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 5449940 - 5449984
Alignment:
Q  15 tactgtagaagatttaagaaggtctcccaccctaaacggcaccat 59  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||    
T  5449940 tactgtaggagatctaagaaggtctcccaccctaaacgacaccat 5449984  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48158196 - 48158146
Alignment:
Q  1 aaaaagaggtctcatactgtagaagatttaagaaggtctcccaccctaaac 51  Q
    ||||||||||||| ||| |||| |||  |||||||||||||||||||||||    
T  48158196 aaaaagaggtctcctacggtaggagacctaagaaggtctcccaccctaaac 48158146  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31139 - 31083
Alignment:
Q  1 aaaaagaggtctcatactgtagaagatttaagaaggtctcccaccctaaacggcacc 57  Q
    ||||||||||||| ||| |||| |||  ||||||||||||| |||||||||| ||||    
T  31139 aaaaagaggtctcctacggtaggagacctaagaaggtctccgaccctaaacgacacc 31083  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5394 - 5450
Alignment:
Q  1 aaaaagaggtctcatactgtagaagatttaagaaggtctcccaccctaaacggcacc 57  Q
    ||||||||||||| ||| |||| |||  ||||||||||||| |||||||||| ||||    
T  5394 aaaaagaggtctcctacggtaggagacctaagaaggtctccgaccctaaacgacacc 5450  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14834305 - 14834249
Alignment:
Q  1 aaaaagaggtctcatactgtagaagatttaagaaggtctcccaccctaaacggcacc 57  Q
    ||||||||||||| ||| |||| |||  ||||||||||||| |||||||||| ||||    
T  14834305 aaaaagaggtctcctacggtaggagacctaagaaggtctccgaccctaaacgacacc 14834249  T

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