View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7511_high_1 (Length: 641)
Name: NF7511_high_1
Description: NF7511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7511_high_1 |
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| [»] scaffold0066 (1 HSPs) |
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| [»] scaffold0407 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 49 - 623
Target Start/End: Complemental strand, 3530577 - 3530003
Alignment:
| Q |
49 |
atgtgctgaaaaatgtgcatattcttttcttttcaaataatctacacgcaagataatcaaataatattcaaggctaaatgaacttgtttcgagaaccctc |
148 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530577 |
atgtgctgaaaaatgtgcatattcttttctttccaaataatctacacgcaagataatcaaataatattcaaggctaaatgaacttgtttcgagaaccctc |
3530478 |
T |
|
| Q |
149 |
ctaaaccaccaaaatgtgataggtgatccaaaagagtttcatgagaaacaataacaaagtctaaccaatgacaaaccaagtgcaagattctactgaaaaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3530477 |
ctaaaccaccaaaatgtgataggtgatccaaaagagttccatgagaaacaataacaaagtctaaccaatgacaaaccaagtacaagattctactgaaaaa |
3530378 |
T |
|
| Q |
249 |
gtcacattttgcaaacaagtaatccatgtcttcaatcatatcacaacctcccacatacaattgatcgttatgattaagaattcctcgcttaaacaaattt |
348 |
Q |
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|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530377 |
gttacattttgcaaacaagtaatccatgtcttcaatcataccacaacctcccacatacaattgatcgttatgattaagaattcctcgcttaaacaaattt |
3530278 |
T |
|
| Q |
349 |
actttgatagaaatgtgattcaaagaatttgatcgtcatccacatgattaataacattctccggtgtcaaatgttgatatgtagtgttcacttaatagca |
448 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
3530277 |
actttggtagaaatatgattcaaagaatttgatcgtcatctacatgattaataatattctccagtgtcaaatgttgatatatagtgttcacttaatagca |
3530178 |
T |
|
| Q |
449 |
ttgaaatggaggcaatttctactcacctatcattcatactaacttgcaaaatattgctccatccatttctaattataagcactttttgagaaaaactttt |
548 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
3530177 |
ttgaaatggaggcaatttctactcacctatcattcatactaacttgcaaaacattgctccctccgtttctaattataagcactttttgagaaaaactttt |
3530078 |
T |
|
| Q |
549 |
gtccctaaatataagttcttctacaaatgacttgatgcatttattattatttttaaaacatatcccaaagtaata |
623 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530077 |
gtccctaaatataagttcttctacaaatgacttgatgcatttattattatttttaaaacatatcccaaagtaata |
3530003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 15898361 - 15898418
Alignment:
| Q |
545 |
ttttgtccctaaatataagttcttctacaaatgacttgatgcatttattattattttt |
602 |
Q |
| |
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|||||||||||||||||| |||| | ||||| ||| ||||||||||||||||||||| |
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| T |
15898361 |
ttttgtccctaaatataaactctttttcaaattactagatgcatttattattattttt |
15898418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 50 - 363
Target Start/End: Original strand, 9827511 - 9827824
Alignment:
| Q |
50 |
tgtgctgaaaaatgtgcatattcttttcttttcaaataatctacacgcaagataatcaaataatattcaaggctaaatgaacttgtttcgagaaccctcc |
149 |
Q |
| |
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|||||| |||| |||||| ||| ||||||| ||||||| |||| ||||||| |||||||||||||||||| | |||| |||||||| || ||||| |
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| T |
9827511 |
tgtgctaaaaagcgtgcatgttcctttctttcttaataatccacacataagataactaaataatattcaaggctagacgaacatgtttcgaaaatcctcc |
9827610 |
T |
|
| Q |
150 |
taaaccaccaaaatgtgataggtgatccaaaagagtttcatgagaaacaataacaaagtctaaccaatgacaaaccaagtgcaagattctactgaaaaag |
249 |
Q |
| |
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||||||||||||||||| |||||||||| | | |||| | | |||||| ||||||||| ||||||||||| |||| |||| | | ||| | | |||||| |
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| T |
9827611 |
taaaccaccaaaatgtgctaggtgatccgacatagttcccttagaaactataacaaagcctaaccaatgagaaactaagtaccaaattttgcaaaaaaag |
9827710 |
T |
|
| Q |
250 |
tcacattttgcaaacaagtaatccatgtcttcaatcatatcacaacctcccacatacaattgatcgttatgattaagaattcctcgcttaaacaaattta |
349 |
Q |
| |
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|||||||||||||| || || |||||||||| ||||| ||||||||||| | |||||||| |||||||||| |||| ||||| |||||||||||| |
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| T |
9827711 |
tcacattttgcaaataaacgattcatgtcttcattcataccacaacctcccgtgcataattgatcattatgattaataatttctcgcctaaacaaattta |
9827810 |
T |
|
| Q |
350 |
ctttgatagaaatg |
363 |
Q |
| |
|
||||||| ||||| |
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|
| T |
9827811 |
ttttgataaaaatg |
9827824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 601
Target Start/End: Original strand, 12998564 - 12998645
Alignment:
| Q |
520 |
attataagcactttttgagaaaaacttttgtccctaaatataagttcttctacaaatgacttgatgcatttattattatttt |
601 |
Q |
| |
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|||||||||||| ||||||||||| | |||||||||||||||| ||| ||||||| ||| |||||||| |||||| |||| |
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| T |
12998564 |
attataagcactctttgagaaaaaaatgtgtccctaaatataagcccttatacaaattactcgatgcattaattattttttt |
12998645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 14551 - 14653
Alignment:
| Q |
75 |
ttcttttcaaataatctacacgcaagataatcaaataatattcaaggctaaatgaacttgtttcgagaaccctcctaaaccaccaaaatgtgataggtga |
174 |
Q |
| |
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|||||| |||||||||||||| |||||||| |||||||||||| |||| || ||| ||| ||||| || |||| ||||||||||||||| ||||||| |
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| T |
14551 |
ttctttccaaataatctacacacaagataaccaaataatattcgaggcaaagcgaatttgcttcgaaaaacctcataaaccaccaaaatgcactaggtga |
14650 |
T |
|
| Q |
175 |
tcc |
177 |
Q |
| |
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||| |
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| T |
14651 |
tcc |
14653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 41672404 - 41672490
Alignment:
| Q |
517 |
ctaattataagcactttttgagaaaaac-ttttgtccctaaatataagttcttctacaaatgacttgatgcatttattattattttt |
602 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||||||||||||| ||| ||||||| ||| ||||||||||||||| ||||| |
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| T |
41672404 |
ctaattataagcactcttttagaaaaaagttttgtccctaaatataagcccttatacaaattactagatgcatttattatttttttt |
41672490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0407 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0407
Description:
Target: scaffold0407; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 1921 - 1826
Alignment:
| Q |
82 |
caaataatctacacgcaagataatcaaataatattcaaggctaaatgaacttgtttcgagaaccctcctaaaccaccaaaatgtgataggtgatcc |
177 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| |||| || ||| || ||||| || |||| ||||||||||||||| |||||||||| |
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| T |
1921 |
caaataatctacacacaagataaccaaataatattcgaggcaaagcgaatctgcttcgaaaaacctcataaaccaccaaaatgcactaggtgatcc |
1826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0407; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 8387 - 8292
Alignment:
| Q |
82 |
caaataatctacacgcaagataatcaaataatattcaaggctaaatgaacttgtttcgagaaccctcctaaaccaccaaaatgtgataggtgatcc |
177 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| |||| || ||| || ||||| || |||| ||||||||||||||| |||||||||| |
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| T |
8387 |
caaataatctacacacaagataaccaaataatattcgaggcaaagcgaatctgcttcgaaaaacctcataaaccaccaaaatgcactaggtgatcc |
8292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 608
Target Start/End: Original strand, 8818002 - 8818094
Alignment:
| Q |
516 |
tctaattataagcactttttgagaaaaacttttgtccctaaatataagttcttctacaaatgacttgatgcatttattattatttttaaaaca |
608 |
Q |
| |
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|||||||| || |||| ||||||||||| | | ||| ||||||||||| | || || |||| ||| |||| |||||||||||||||| ||||| |
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| T |
8818002 |
tctaattacaaacactctttgagaaaaattgtggtctctaaatataagcttttatataaattactagatgtatttattattattttttaaaca |
8818094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 33232046 - 33231988
Alignment:
| Q |
543 |
acttttgtccctaaatataagttcttctacaaatgacttgatgcatttattattatttt |
601 |
Q |
| |
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|||||||||||||||||||| ||| | | ||||| ||| ||||||||||||||| |||| |
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| T |
33232046 |
acttttgtccctaaatataaattcattttcaaattactagatgcatttattattttttt |
33231988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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