View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7511_low_3 (Length: 308)
Name: NF7511_low_3
Description: NF7511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7511_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 26275450 - 26275162
Alignment:
| Q |
11 |
acatcagtgccaaaatacatgtcataaacccgcaacataatagcaggccaaatgaaacttcacatacaagcaatatggtcgacattttctacctggtgta |
110 |
Q |
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| T |
26275450 |
acatcagtgccaaaatacatgtcataaacccgcaacataatagcaggccaaatgaaacttcacatacaagcaatatggtcgacattttctacctggtgta |
26275351 |
T |
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| Q |
111 |
agatttcatgttagttagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtttgggcttcatattcacatcctcgacaatttgtca |
210 |
Q |
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| T |
26275350 |
atatttcatgttaggtagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtttgatcttcatattcacatcctcgacaatttgtca |
26275251 |
T |
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| Q |
211 |
gtcacaagtaaccttaaacaaccttttgtttattactcagctgccacttggctgagttctttatatttattttcccacttgtttcttctc |
300 |
Q |
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| T |
26275250 |
gtcacaagtaaccttaaacaaccttttgtttattactcagctgccacttggctgagttctttatatttatttt-ccacttgtttcttctc |
26275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 26250817 - 26250885
Alignment:
| Q |
108 |
gtaagatttcatgttagttagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtt |
176 |
Q |
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| T |
26250817 |
gtaagatttcatgttaggtagtttctaccacctgcaataccaactttctcacctttcccatcttcagtt |
26250885 |
T |
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