View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7511_low_8 (Length: 278)

Name: NF7511_low_8
Description: NF7511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7511_low_8
NF7511_low_8
[»] chr8 (3 HSPs)
chr8 (98-222)||(12587431-12587555)
chr8 (102-257)||(27324510-27324665)
chr8 (17-71)||(12587574-12587628)
[»] chr7 (2 HSPs)
chr7 (98-259)||(22970075-22970237)
chr7 (17-71)||(22969998-22970052)
[»] chr3 (2 HSPs)
chr3 (98-259)||(49602940-49603102)
chr3 (17-71)||(49603125-49603179)
[»] chr1 (2 HSPs)
chr1 (98-259)||(21880388-21880550)
chr1 (17-71)||(21880573-21880627)
[»] chr6 (2 HSPs)
chr6 (99-223)||(6900602-6900726)
chr6 (17-71)||(6900528-6900582)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 12587555 - 12587431
Alignment:
Q  98 cacagtgaacaaacaaactccctttttgtttcaaccacatcaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttct 197  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587555 cacagtgaacaaacaaactccctctctgtttcaaccacatcaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttct 12587456  T
Q  198 tgtgtctctaatcttcttattcctt 222  Q
    ||||||||||||||||| |||||||    
T  12587455 tgtgtctctaatcttctcattcctt 12587431  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 257
Target Start/End: Complemental strand, 27324665 - 27324510
Alignment:
Q  102 gtgaacaaacaaactccctttttgtttcaaccacatcaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttcttgtg 201  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||| || ||||| ||||||    
T  27324665 gtgaacaaacaaactccctctctgtttcaaccacataaaaaaatcaaccacttccacatccttgtttcaaaacaaaacttcctcctctttgttacttgtg 27324566  T
Q  202 tctctaatcttcttattccttannnnnnnnctttcttcctccattggtggtgatct 257  Q
    |||||||||||||||||||||         || |||||||||||||||||||||||    
T  27324565 tctctaatcttcttattcctttactattttctctcttcctccattggtggtgatct 27324510  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 12587628 - 12587574
Alignment:
Q  17 attctaattcacaccaacacaacacacgtcccgccatccacaattcacaatcacg 71  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||    
T  12587628 attctgatttacaccaacacaacacaggtcccgccatccacaatttacaatcacg 12587574  T

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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 98 - 259
Target Start/End: Original strand, 22970075 - 22970237
Alignment:
Q  98 cacagtgaacaaacaaactccctttttgtttcaaccacatcaaaa-aatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttc 196  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22970075 cacagtgaacaaacaaactccctctctgtttcaaccacatcaaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttc 22970174  T
Q  197 ttgtgtctctaatcttcttattccttannnnnnnnctttcttcctccattggtggtgatctaa 259  Q
    || ||||||||||||||| ||||||||        || |||||||||||||||||||||||||    
T  22970175 ttatgtctctaatcttctcattccttattttttttctctcttcctccattggtggtgatctaa 22970237  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 22969998 - 22970052
Alignment:
Q  17 attctaattcacaccaacacaacacacgtcccgccatccacaattcacaatcacg 71  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  22969998 attctgatttacatcaacacaacacacgtcccgccatccacaatttacaatcacg 22970052  T

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Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 49603102 - 49602940
Alignment:
Q  98 cacagtgaacaaacaaactccctttttgtttcaaccacatcaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttct 197  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49603102 cacagtgaacaaacaaactccctctctgtttcaacaacatcaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttct 49603003  T
Q  198 tgtgtctctaatcttcttattcctta-nnnnnnnnctttcttcctccattggtggtgatctaa 259  Q
    ||||||||||||||||| ||||||||         || |||||||||||||||||||||||||    
T  49603002 tgtgtctctaatcttctcattccttatttttttttctctcttcctccattggtggtgatctaa 49602940  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 49603179 - 49603125
Alignment:
Q  17 attctaattcacaccaacacaacacacgtcccgccatccacaattcacaatcacg 71  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49603179 attctgattcacaccaacacaacacacgtcccgccatccacaattcacaatcacg 49603125  T

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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 21880550 - 21880388
Alignment:
Q  98 cacagtgaacaaacaaactccctttttgtttcaaccacatcaaaaaa-tcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttc 196  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21880550 cacagtgaacaaacaaactccctctctgtttcaaccacatcaaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttc 21880451  T
Q  197 ttgtgtctctaatcttcttattccttannnnnnnnctttcttcctccattggtggtgatctaa 259  Q
    || ||||||||||||||| ||||||||        || |||||||||||||||||||||||||    
T  21880450 ttatgtctctaatcttctcattccttattttttttctctcttcctccattggtggtgatctaa 21880388  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 21880627 - 21880573
Alignment:
Q  17 attctaattcacaccaacacaacacacgtcccgccatccacaattcacaatcacg 71  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  21880627 attctgatttacatcaacacaacacacgtcccgccatccacaatttacaatcacg 21880573  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 6900602 - 6900726
Alignment:
Q  99 acagtgaacaaacaaactccctttttgtttcaaccacatcaaaaaatcaaccacatccacatccttgttttaaaataaaacttcctcttccttgtttctt 198  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6900602 acagtgaacaaacaaacaccctctctgtttcaaccacatcaaaaaatcaaccatatccacatccttgttttaaaataaaacttcctcttccttgtttctt 6900701  T
Q  199 gtgtctctaatcttcttattcctta 223  Q
    |||||||||||||||| ||||||||    
T  6900702 gtgtctctaatcttctcattcctta 6900726  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6900528 - 6900582
Alignment:
Q  17 attctaattcacaccaacacaacacacgtcccgccatccacaattcacaatcacg 71  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6900528 attctgattcacaccaacacaacacacgtcccgccatccacaattcacaatcacg 6900582  T

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