View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7511_low_9 (Length: 256)
Name: NF7511_low_9
Description: NF7511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7511_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 54219990 - 54220228
Alignment:
| Q |
18 |
aggaaagacgtgaaagatataatgtcttcagatttgtgaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatga |
117 |
Q |
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| T |
54219990 |
aggaaagacgtgaaagatataatgtcttcagatttgggaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatga |
54220089 |
T |
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| Q |
118 |
gtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtgcataagataac |
217 |
Q |
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| T |
54220090 |
gtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtgcataagataac |
54220189 |
T |
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| Q |
218 |
aaaatattaactttccatgcatcatatatatcaattcct |
256 |
Q |
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| T |
54220190 |
aaaatattaactttccatgcatcatatatatcaattcct |
54220228 |
T |
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Back To:
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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 17594481 - 17594279
Alignment:
| Q |
18 |
aggaaagacgtgaaagatataatgtcttcagatttgtgaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatga |
117 |
Q |
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| T |
17594481 |
aggaaagatgtgaaagatataacgtcttcaagttagggaaacgtataccatcaggtatatatagaatgaaaccaaattctaaacacaacttattcaatga |
17594382 |
T |
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| Q |
118 |
gtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtgcataagataac |
217 |
Q |
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| T |
17594381 |
ttgggatgctgagaaattattgggtaacacaaacctagcaaatgtatggtctagggaaagtttaagatcaaggagtttgtgcatcaatgctgaagataac |
17594282 |
T |
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| Q |
218 |
aaa |
220 |
Q |
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||| |
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| T |
17594281 |
aaa |
17594279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 14729006 - 14729208
Alignment:
| Q |
18 |
aggaaagacgtgaaagatataatgtcttcagatttgtgaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatga |
117 |
Q |
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|||||||| ||||||||||||| ||||||| || | ||| | ||||||||||||||| | | | || ||| ||||||| |||||||||||||||| |
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| T |
14729006 |
aggaaagatgtgaaagatataacgtcttcaagttagggaaacgtataccatcaggtatatatagagtgaaaccaaattctaagcacaacttattcaatga |
14729105 |
T |
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| Q |
118 |
gtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtgcataagataac |
217 |
Q |
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| T |
14729106 |
ttgggatgctgagaaattattgggtaacacaaacctagcaaatgtttggtctagggaaagtttaagatcaaggagtttgtgcatcaatgctgaagataac |
14729205 |
T |
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| Q |
218 |
aaa |
220 |
Q |
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||| |
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| T |
14729206 |
aaa |
14729208 |
T |
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