View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7512_low_2 (Length: 357)
Name: NF7512_low_2
Description: NF7512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7512_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 28000294 - 27999960
Alignment:
| Q |
18 |
acactaagattctccaatgtctccttgaaagaaaaatatattaatatatgtt----gtatgttattttaatcttgtagattctctcggttttttactcct |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28000294 |
acactaatattctccaatgtctccttgaaaaaaaaatatattaatatatgttctatgtatgttattttaatcttgtagattctctcggttttttactcct |
28000195 |
T |
|
| Q |
114 |
ccaaatttaacttctaccacaattttattcttttgttcgctcaaataaaacaaacaaataaagccaacatttttcagttgtgtcatatatttattgagca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28000194 |
ccaaatttaacttctaccacaattttattcttttgttcgctcaaataaaacaaacaaataaagccaacatttttcagttgtgtcatatatttattgagca |
28000095 |
T |
|
| Q |
214 |
aatttgagccattaaaagttaggaatacatcacatttttcataggtgggtaaaatggttcattttttcacccctcgttttcaatgtcttgaaatattaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28000094 |
aatttgagccattaaaagttaggaatacatcacatttttcataggtgggtaaaatggttcattttttcacccctcgttttcaatgtcttgaaatattaat |
27999995 |
T |
|
| Q |
314 |
ctgacagtggtccaaagttttactagctttcattt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27999994 |
ctgacagtggtccaaagttttactagctttcattt |
27999960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University