View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7512_low_3 (Length: 334)
Name: NF7512_low_3
Description: NF7512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7512_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 54 - 318
Target Start/End: Original strand, 6623538 - 6623802
Alignment:
| Q |
54 |
aacagcactatccctccatgaacagattttatcttcccagattttgtaatgctggaatctgcttacatattttaattcttcttatatctgcaccactgct |
153 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623538 |
aacagcactatccctccatgaacagcctttatcttcccagattttgtaatgctggaatctgcttacatattttaattcttcttatatctgcaccactgct |
6623637 |
T |
|
| Q |
154 |
ttcttttagccctataatcaagaaagaaaataaatatacttgattagtcacttttattgaggtgctcgcaccactaggtgagaaaatatatatctactat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6623638 |
ttcttttagccctataatcaagaaagaaaataaatatacttgattagtcacttttattgaggtgctggcaccactaggtgagaaaatatatatctactat |
6623737 |
T |
|
| Q |
254 |
caaaaagaccaatgtgaaaaaaggtcattttacactctaaccaactttgttaactagttataaat |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623738 |
caaaaagaccaatgtgaacaaaggtcattttacactctaaccaactttgttaactagttataaat |
6623802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 6623365 - 6623408
Alignment:
| Q |
15 |
tattgtcaacacagtggaagtcaacacaatctgtaccacaacag |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623365 |
tattgtcaacacagtggaagtcaacacaatctgtaccacaacag |
6623408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University