View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7512_low_4 (Length: 300)
Name: NF7512_low_4
Description: NF7512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7512_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 14424827 - 14424528
Alignment:
| Q |
1 |
tattttacttgcttcttggataaccccaaacttgctggaagacatgcactacttttatgagattgctcaaaaaagtcataacttac--cattttttgaca |
98 |
Q |
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| T |
14424827 |
tattttacttgcttcttggataaccccaaactttctggaagacatgcactacttttatgagattgctcaaaaaagtcataacttacaccattttttgaca |
14424728 |
T |
|
| Q |
99 |
actttgccacgttttacgcttccaacttcttggttagtgcttcgattttgttgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtt |
198 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14424727 |
actttgccacgttttacgcttccaacttcttggctagtgcttcgattttgttgctaagaagtttgtttcttgctattaatgcatcatgcatttccaagtt |
14424628 |
T |
|
| Q |
199 |
tggaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcg-ttcaaggacatgttatcaatgagctcttggatttctgttgcaat |
297 |
Q |
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| T |
14424627 |
tggaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcgtttcaaggacatgttatcaatgagctcttggatttctattgcaat |
14424528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 295
Target Start/End: Original strand, 75362 - 75505
Alignment:
| Q |
152 |
ctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaaatact |
251 |
Q |
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| T |
75362 |
ctaaggagtttgttgcttaccagtaaggcatcatgagttttcaaacttagaactccctgcttctttacaacacccatattctcgctttaaggacgataca |
75461 |
T |
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| Q |
252 |
cgttcaaggacatgttatcaatgagctcttggatttctgttgca |
295 |
Q |
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|||| ||||||||||| || |||| |||| ||||| ||||||| |
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| T |
75462 |
cgtttaaggacatgttttctatgaactctcggattcatgttgca |
75505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 19292525 - 19292255
Alignment:
| Q |
19 |
gataaccccaaacttgctggaagacatgcactacttttatgagattgctcaaaaaagtcataacttac--cattttttgacaactttgccacgttttacg |
116 |
Q |
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|||||||| |||||||||||||| ||||||| ||||| | ||| ||||||| ||||||| | ||||| |||| ||||||||||| | || | || | |
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| T |
19292525 |
gataaccctaaacttgctggaagtcatgcaccactttcacgagcttgctcataaaagtcccatcttacaccattgattgacaacttttctacttcttctg |
19292426 |
T |
|
| Q |
117 |
cttccaacttcttggttagtgcttcgattttgttgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttctt |
216 |
Q |
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| T |
19292425 |
cttccaacctcttagctaatgctttgatcttgtcactaagaagtttgttgctttttagtaaggcatcatgtgtttgcaaacatagaactccttgcttttt |
19292326 |
T |
|
| Q |
217 |
aacaacacccctatactcgctttgagggaaatactcgttcaaggacatgttatcaatgagctcttggattt |
287 |
Q |
| |
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||| |||||| ||| ||||||||||||| ||||||||||||||||||| | | ||||| |||| |||||| |
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| T |
19292325 |
aaccacacccatattctcgctttgagggcgatactcgttcaaggacatgatgtaaatgaactctcggattt |
19292255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 28313343 - 28313079
Alignment:
| Q |
19 |
gataaccccaaacttgctggaagacatgcactacttttatgagattgctcaaaaaagtcataactt--accattttttgacaactttgccacgttttacg |
116 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||| ||||| |||||| |||||||||| ||| || ||| | ||||||||||| || | || | |
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| T |
28313343 |
gataacctcaaacttgttggaagacatgcaccactttcatgagcgtgctcacaaaagtcatagcttacactattgatagacaactttgctacttcttgca |
28313244 |
T |
|
| Q |
117 |
cttccaacttcttggttagtgcttcgattttgttgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttctt |
216 |
Q |
| |
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|||||| | |||| | ||| || ||| |||| | || |||||||| ||| ||| ||||||||||| ||||||||| || ||||||| |||||||| |
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| T |
28313243 |
cttccatc-tcttagctag---tttgatcttgtaattgaggagtttgttgctttctagtaatgcatcat--gtttccaagcttagaactccctgcttctt |
28313150 |
T |
|
| Q |
217 |
aacaacacccctatactcgctttgagggaaatactcgttcaaggacatgttatcaatgagctcttggattt |
287 |
Q |
| |
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|| ||| |||||| |||||||||||| ||| ||||||||||||||||| || ||||||||| |||||| |
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| T |
28313149 |
taccacatccctattctcgctttgaggacgatattcgttcaaggacatgttgtcgatgagctctcggattt |
28313079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 13395115 - 13395083
Alignment:
| Q |
18 |
ggataaccccaaacttgctggaagacatgcact |
50 |
Q |
| |
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| T |
13395115 |
ggataaccccaaacttgctggaagacatgcact |
13395083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 13394934 - 13394871
Alignment:
| Q |
201 |
gaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcgttcaaggacat |
264 |
Q |
| |
|
|||||||||| ||||| || ||||||||| ||||||||||||| | |||||||||||||||| |
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| T |
13394934 |
gaactccatgattcttcaccacacccctagtctcgctttgagggtgacactcgttcaaggacat |
13394871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 273
Target Start/End: Complemental strand, 7405330 - 7405203
Alignment:
| Q |
146 |
ttgttgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgaggga |
245 |
Q |
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|
|||||||||||||| ||||| ||||||| ||| |||||||||||||| | || ||||||| ||||| |||| |||| |||||| || | ||| | | |
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| T |
7405330 |
ttgttgctaagaagcttgttgcttgctaataaggcatcatgcgtttctgggcttagaactccttgcttattaataacatccctattatcaccttgggagc |
7405231 |
T |
|
| Q |
246 |
aatactcgttcaaggacatgttatcaat |
273 |
Q |
| |
|
|||||| |||||||||||||||||||| |
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| T |
7405230 |
gatactcattcaaggacatgttatcaat |
7405203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 40791413 - 40791373
Alignment:
| Q |
247 |
atactcgttcaaggacatgttatcaatgagctcttggattt |
287 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||||||||| |
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|
| T |
40791413 |
atactcgtttaaggacatgtaatcaataagctcttggattt |
40791373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 13040596 - 13040707
Alignment:
| Q |
167 |
cttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcgttcaaggacatgt |
266 |
Q |
| |
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||||||||||| |||||||| |||||||| || ||||||| |||||||| || || |||||| |||| ||||||| ||| | ||| |||| ||||| |
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| T |
13040596 |
cttgctattaaggcatcatgaatttccaagcttagaactccttgcttcttcaccacgtccctatcctcgttttgaggacgatatttgttaaaggccatgt |
13040695 |
T |
|
| Q |
267 |
tatcaatgagct |
278 |
Q |
| |
|
| |||||||||| |
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|
| T |
13040696 |
tgtcaatgagct |
13040707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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