View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7513_high_5 (Length: 293)
Name: NF7513_high_5
Description: NF7513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7513_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 36848880 - 36848602
Alignment:
| Q |
5 |
gtgggttgaatgcactacatgcgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcagatttggactgcagggctgagtacatatgtcct |
104 |
Q |
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| T |
36848880 |
gtgggttgaatgcactaaatgtgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcagatttggactgcagggctgagtacatatgtctt |
36848781 |
T |
|
| Q |
105 |
ttatgccgcctaaaagaaattgaaaatggacggcatgttccctcaaaggctgctaattattgtgctaaggacttgacaagaactgtgctaagtgaccact |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36848780 |
ttatgccgcctaaaagaaattgaaaatggacggcatgttccctcaaaggctgctaattattgtgctaaggacttgacaagaactgtgctaagtgaccact |
36848681 |
T |
|
| Q |
205 |
tagagaaaagacttttcgagcgtctcatgcaagagagagagaactgggaaaaagttgaagggaatgagaaacttgatga |
283 |
Q |
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| T |
36848680 |
tagagaaaagacttttcgagcgtctcctgcaagagagagagaactgggaaaaagttgaagggaatgagaaacttgatga |
36848602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 6163298 - 6163016
Alignment:
| Q |
5 |
gtgggttgaatgcactacatgcgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcagatttggactgcagggctgag--tacatatgtc |
102 |
Q |
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|||||||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| || ||||||| |
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| T |
6163298 |
gtgggttgaatgcaataaatgcgaaagatggcagcatcaaatttgtgcactctacaacaagaaagcagatttagactgcagtgctgagtatatatatgtc |
6163199 |
T |
|
| Q |
103 |
ctttatgccgcctaaaagaaattgaaaatggacggcatgttccct---caaaggctgctaattattgtgctaaggacttgacaagaactgtgctaagtga |
199 |
Q |
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| T |
6163198 |
ctgtatgccaccaaaaagaaattggaaagggaatgcatgttcccttaccaaaggcggctaattctggtgctaaggactttccaagaactgtgctaactga |
6163099 |
T |
|
| Q |
200 |
ccacttagagaaaagacttttcgagcgtctcatgcaagagagagagaactgggaaaaagttgaagggaatgagaaacttgatga |
283 |
Q |
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| T |
6163098 |
ccacttagagaaaagacttttcgagcgtctca-acaagagagagaaaactgggaaaaagttgaagggaatgagaatcttgatga |
6163016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 36860152 - 36860010
Alignment:
| Q |
8 |
ggttgaatgcactacatgcgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcaga-------tttggactgcagggctgagtacatatg |
100 |
Q |
| |
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||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||| ||| | |||||||||| |||||||| ||||| |
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| T |
36860152 |
ggttgaatgcaataaatgcgaaagatggcagcatcaaatatgtgcactctataacaagaaagaagacgtggattctggactgcagtgctgagtatatatg |
36860053 |
T |
|
| Q |
101 |
tcctttatgccgcctaaaagaaattgaaaatggacggcatgtt |
143 |
Q |
| |
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| T |
36860052 |
tcctttatgccgcctaaaagaaattgaaaatggaatgcatgtt |
36860010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 6678947 - 6679200
Alignment:
| Q |
5 |
gtgggttgaatgcactacatgcgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcagatttggactgcagggctgagtacatatgtcct |
104 |
Q |
| |
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|||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||| |
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| T |
6678947 |
gtgggttgaatgcaataaatgcgaaagatggcagcatcaaatatgtgcactctacaacaagaaagcagattctgactgcagtgccgagtatatatgtcct |
6679046 |
T |
|
| Q |
105 |
ttatgccgcctaaaagaaattgaaaatggacggcatgttccct---caaaggctgctaattattgtgctaaggacttgacaagaactgtgctaagtgacc |
201 |
Q |
| |
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||||||||| ||||||||| | | || |||||||| ||||||||||||| | | ||||||||||||||||||||||||| || ||||||| |
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| T |
6679047 |
ttatgccgcttaaaagaaa--gcagatt-------tgttcccttaccaaaggctgctaactttggtgctaaggacttgacaagaactgttctgagtgacc |
6679137 |
T |
|
| Q |
202 |
acttagagaaaagacttttcgagcgtctcatgcaagagagagagaactgggaaaaagttgaag |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
6679138 |
acttagagaaaagacttttcgagcgtctcatgcaagagagaaaaaactgggaaaaagatgaag |
6679200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 6667540 - 6667663
Alignment:
| Q |
5 |
gtgggttgaatgcactacatgcgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcagatttggactgcagggctgagtacatatgtcct |
104 |
Q |
| |
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|||||||||||||| || |||| | | |||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||| | |||||| |
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| T |
6667540 |
gtgggttgaatgcagtaaatgcaataaatggcagcatcaaatatgtgcactctataacaa------agatttggactgcaattctgtgtatacgtgtcct |
6667633 |
T |
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| Q |
105 |
ttatgccgcctaaaagaaattgaaaatgga |
134 |
Q |
| |
|
||||||| | ||||||| |||||||||||| |
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| T |
6667634 |
ttatgcctcttaaaagagattgaaaatgga |
6667663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 6667703 - 6667779
Alignment:
| Q |
168 |
gctaaggacttgacaagaactgtgctaagtgaccacttagagaaaagacttttcgagcgtctcatgcaagagagaga |
244 |
Q |
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| T |
6667703 |
gctaaggacctgccgaaaaccgtgcttagtgaccatctagagaaaagactttttgagcgcctaatgcaagagagaga |
6667779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 6780528 - 6780473
Alignment:
| Q |
189 |
gtgctaagtgaccacttagagaaaagacttttcgagcgtctcatgcaagagagaga |
244 |
Q |
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||||| |||||||| |||||||||||||||| ||||| || |||||||||||||| |
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| T |
6780528 |
gtgcttagtgaccatatagagaaaagactttttgagcgcctaatgcaagagagaga |
6780473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 49880833 - 49881112
Alignment:
| Q |
5 |
gtgggttgaatgcactacatgcgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcagatttggactgcagggctgagtacatatgtcct |
104 |
Q |
| |
|
|||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| | ||| |||||||| ||||||||| |
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| T |
49880833 |
gtgggttgaatgcaataaatgcaaaagatggcagcatcaaatatgtgcactctacaacaacaaaagagatttggattccagtgctgagtatatatgtcct |
49880932 |
T |
|
| Q |
105 |
ttatgccgcctaaaagaaattgaaaatggacggcatgttccct---caaaggctgctaattattgtgctaaggacttgacaagaactgtgctaagtgacc |
201 |
Q |
| |
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|||||||| |||||||||||||||| ||| |||||||| | |||| |||||||||| | |||||||||||||| ||||||| |||| ||||||| |
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| T |
49880933 |
gtatgccgcttaaaagaaattgaaaacggaattcatgttcctttaccaaaagctgctaattttggtgctaaggacttgccaagaaccatgcttagtgacc |
49881032 |
T |
|
| Q |
202 |
acttagagaaaagacttttcgagcgtctcatgcaagagagagagaactgggaaaaagttgaagggaatgagaaacttgat |
281 |
Q |
| |
|
|||| || ||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
49881033 |
acttggaaaaaagactttttgagcgtctcgtagaagagagagcaaactgggaaaaagttgaagggaatgagaatcttgat |
49881112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 46521228 - 46521507
Alignment:
| Q |
5 |
gtgggttgaatgcactacatgcgaaaggtggcagcatcaaatatgtgcactctacaacaagaaagcagatttggactgcagggctgagtacatatgtcct |
104 |
Q |
| |
|
|||||||||||||| || |||| |||| ||||| |||||||||||||||||||||||||| | | ||||||||| ||||| |||||||| ||||||||| |
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| T |
46521228 |
gtgggttgaatgcaataaatgcaaaagatggcaacatcaaatatgtgcactctacaacaacagaagagatttggattgcagagctgagtatatatgtcct |
46521327 |
T |
|
| Q |
105 |
ttatgccgcctaaaagaaattgaaaatggacggcatgttccctca---aaggctgctaattattgtgctaaggacttgacaagaactgtgctaagtgacc |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| || || | ||||||||||||| | |||||||||||||| ||||||| ||||||||||||| |
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| T |
46521328 |
atatgccgctcaaaagaaattgaaaatggaaagcatgctcacttactgaaggctgctaattttggtgctaaggacttgccaagaaccgtgctaagtgacc |
46521427 |
T |
|
| Q |
202 |
acttagagaaaagacttttcgagcgtctcatgcaagagagagagaactgggaaaaagttgaagggaatgagaaacttgat |
281 |
Q |
| |
|
||||||| ||||||||| | ||| ||||||| |||||||||| || |||||||| ||||||||||| ||||| |||||| |
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| T |
46521428 |
acttagaaaaaagacttattgagtgtctcatccaagagagagcaaagtgggaaaatgttgaagggaacgagaatcttgat |
46521507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 18135023 - 18135077
Alignment:
| Q |
226 |
gtctcatgcaagagagagagaactgggaaaaagttgaagggaatgagaaacttga |
280 |
Q |
| |
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||||||||||||||||||| ||||| |||||||| |||| ||||||||| ||||| |
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| T |
18135023 |
gtctcatgcaagagagagaaaactgagaaaaagtcgaagcgaatgagaatcttga |
18135077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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