View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7513_low_1 (Length: 438)
Name: NF7513_low_1
Description: NF7513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7513_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 86 - 419
Target Start/End: Original strand, 54456716 - 54457049
Alignment:
| Q |
86 |
cagtggacggtggttttgctggcttccgagcaccattggccaccaacgaggcggcattacgacgagagatggagaaggaacaaatcaggcgggatatgtt |
185 |
Q |
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| T |
54456716 |
cagtggacggtggttttgctggcttccgagcaccattggccaccaacgaggcggcattacgacgagagatggagaaggaacaaatccggcgggatatgtt |
54456815 |
T |
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| Q |
186 |
gcggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcagaagcctctcaattctgtgtggtcaaattct |
285 |
Q |
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| T |
54456816 |
gcggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcagaagcctctcaattctgtgtggtcaaattct |
54456915 |
T |
|
| Q |
286 |
acaccgatgatgatgatgaaccctgttgctgttgatgcttcacaaccacctgaaatcaaacattttccacagaccagtggcaaggacaaagttattctat |
385 |
Q |
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| T |
54456916 |
acaccgatgatgatgatgaaccctgttgctgttgatgcttcacaaccacctgaaatcaaacattttccacagaccagtgacaaggacaaagttattctat |
54457015 |
T |
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| Q |
386 |
tggtcagtttcgtaactttttctattctcttctc |
419 |
Q |
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| T |
54457016 |
tggtcagtttcgtaactttttctattctcttctc |
54457049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 87 - 292
Target Start/End: Original strand, 54056396 - 54056601
Alignment:
| Q |
87 |
agtggacggtggttttgctggcttccgagcaccattggccaccaacgaggcggcattacgacgagagatggagaaggaacaaatcaggcgggatatgttg |
186 |
Q |
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| T |
54056396 |
agtggacggtggtttttctggctcccgggtaccgttggccaccaatgaggcggcattacgacgagagatcgagaaggaacaaatccggcgggatatgttg |
54056495 |
T |
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| Q |
187 |
cggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcagaagcctctcaattctgtgtggtcaaattcta |
286 |
Q |
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| T |
54056496 |
aggcggatggagttggaggaggaagtgaggagggagcttgcaatggagggggcgtttggaaccatgcagaggcctctcaattctctatggtcaaattcta |
54056595 |
T |
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| Q |
287 |
caccga |
292 |
Q |
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|||||| |
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| T |
54056596 |
caccga |
54056601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 54056600 - 54056661
Alignment:
| Q |
357 |
gaccagtggcaaggacaaagttattctattggtcagtttcgtaactttttctattctcttct |
418 |
Q |
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| T |
54056600 |
gacctgtgacaaggacaaagttattctattggtcagtttcattacgttttctactcttttct |
54056661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 54456659 - 54456701
Alignment:
| Q |
19 |
cttttcccattaattctgatatttatttatttattattgctgttgtt |
65 |
Q |
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| T |
54456659 |
cttttcccattaattctga----tatttatttattattgctgttgtt |
54456701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 15039967 - 15039895
Alignment:
| Q |
184 |
ttgcggcggatagagttggaggatgaagtgaggagggagcttgcaatggagggggcgtttggaactatgcaga |
256 |
Q |
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| T |
15039967 |
ttgcggcagaaagaattggaggaggaggtgtggagggagcttgcaatggagaggacgtttggaaccatgcaga |
15039895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 15039809 - 15039756
Alignment:
| Q |
366 |
caaggacaaagttattctattggtca-gtttcgtaactttttctattctcttct |
418 |
Q |
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|||||||||| ||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
15039809 |
caaggacaaaattattctattggtaaagtttcataactttttctattctcttct |
15039756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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