View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7513_low_5 (Length: 294)
Name: NF7513_low_5
Description: NF7513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7513_low_5 |
 | |
|
| [»] scaffold0661 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0126 (1 HSPs) |
| | |
|
| [»] scaffold0218 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 16847794 - 16848069
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16847794 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaag |
16847893 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16847894 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
16847993 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
16847994 |
taccaattaaagtgaacgggaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
16848069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 44 - 291
Target Start/End: Complemental strand, 20965611 - 20965364
Alignment:
| Q |
44 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
143 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||| ||| | ||||| ||||| |||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
20965611 |
ctttcccaagcatcataaagtgactcaccttccccttgcctaaagttggctatctcttgtttcttatccaggtatttggacatagggaaaaacttctcta |
20965512 |
T |
|
| Q |
144 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
243 |
Q |
| |
|
|||||| ||||| | || |||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |
|
|
| T |
20965511 |
aaaacttcagctccagctcatcccatttttggatggtcccattaggcaaagtcaataaccagtctttagctttaccggttaaagtgaacgggaatagtct |
20965412 |
T |
|
| Q |
244 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
|||||||||||| |||| | |||||||| ||||||||||| |||||| |
|
|
| T |
20965411 |
gagtttcttttgatcttcagtaacatttgctggaggaacacaaaactc |
20965364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 5895898 - 5896173
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5895898 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaag |
5895997 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5895998 |
tacttggacatagggaaatacttctctataaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
5896097 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
5896098 |
taccaattaaagtgaacgggaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
5896173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 16322514 - 16322789
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16322514 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaag |
16322613 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16322614 |
tacttggacatagggaaatacttctctagaaacttaagctttaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
16322713 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
16322714 |
taccgattaaagtgaacgggaatagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
16322789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 18504489 - 18504764
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18504489 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaag |
18504588 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18504589 |
tacttggacatagggaaatacttctctagaaacttaagctataattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
18504688 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
18504689 |
taccgattaaagtgaacgggaatagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
18504764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 22018563 - 22018288
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22018563 |
tggacatctcttcagtagcaaattgaacctttcccaagcatcatacaatgattcactttcaccttgccgaaagcttgctatttcttgcttcttatccaag |
22018464 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22018463 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcttcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
22018364 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| |||||||||||| || ||||| |||||||||||||| | | |||||||| ||||||||||| |||||| |
|
|
| T |
22018363 |
taccggttaaagtgaacgaaaatagcctaagtttcttttggtcatcagtaacatttgctggaggaacacaaaactc |
22018288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 290
Target Start/End: Complemental strand, 11785960 - 11785769
Alignment:
| Q |
98 |
tcttgcttcttatccaagtacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtca |
197 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||| ||||||| | |||| | ||||||| ||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
11785960 |
tcttgtttcttgtctaagtacttggacataggtaaa-acttctccaaaaacctcagctctagctcctcccatgtttgaattgtaccattaggtaaagtca |
11785862 |
T |
|
| Q |
198 |
ataaccagtctttagctttaccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaact |
290 |
Q |
| |
|
|||||||||||||||||| || | |||||||| || || | | | |||||||||||||||| | |||||||| |||||| |||| ||||| |
|
|
| T |
11785861 |
gcaaccagtctttagctttatcggtcaaagtgaaaggaaacaacatcagtttcttttggtcttcagtaacatttgctggaggtacacaaaact |
11785769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 24436214 - 24435939
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436214 |
tggacatcttttcagaagcaaattgaatctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaag |
24436115 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436114 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
24436015 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
24436014 |
taccgattaatgtgaacgggaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
24435939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 24902498 - 24902620
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24902498 |
tggacatctcttcagtaacaaattgaatctttcgcaagcatcataaagtgattcaccttcaccttgctaaaagcttgctatttcttgcttcttatccaag |
24902597 |
T |
|
| Q |
116 |
tacttggacatagggaaatactt |
138 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24902598 |
tacttggacatagggaaatactt |
24902620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 24902618 - 24902696
Alignment:
| Q |
213 |
ctttaccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
24902618 |
ctttaccggttaaagtgaacgggaatagcctgagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
24902696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 22921712 - 22921437
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22921712 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaag |
22921613 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
22921612 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattgggaaaagtcaataaccagtctttagctt |
22921513 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
22921512 |
taccgattaaagtgaacgggaatagcctcagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
22921437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 24401371 - 24401096
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| |||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24401371 |
tggacatctcctcaggagcaaattgaatctttcccaggcatcatagagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaag |
24401272 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| | | |
|
|
| T |
24401271 |
tatttggacatagggaaatacttttctagaaaattaagctctaactcctcccatgtttgaatagtcccattaggcaaattcaacaaccagtctttaccct |
24401172 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
| ||| |||| ||||| ||||| ||||| |||||||||||||||| | ||||||||||||||| |||| |||||| |
|
|
| T |
24401171 |
ttccggttaacgtgaaggggaatagcctcagtttcttttggtcttcagtaacatttgttggaggcacacaaaactc |
24401096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0661
Description:
Target: scaffold0661; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 8093 - 7818
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8093 |
tggacatcttttcagaagcaaattgaatctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaag |
7994 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7993 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
7894 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
7893 |
tacctattaatgtgaacggtaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
7818 |
T |
|
Back To:
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Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 14703089 - 14702814
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14703089 |
tggacatctcttcagtagcaaattgaatctttcccaagcatcataaagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaag |
14702990 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14702989 |
tacttggacatagggaaatacttttctagaaacttaagctctaactcctcccatgtttgaatagtcccattaggcaaagtcaataactagtctttagctt |
14702890 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
14702889 |
taccggttaaagtgaacgggaatagcctgagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
14702814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 20464 - 20191
Alignment:
| Q |
18 |
gacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagta |
117 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20464 |
gacatctcttcagtagcaaattgaatctttcccaagcatcataaagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaagta |
20365 |
T |
|
| Q |
118 |
cttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagcttta |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
20364 |
cttggacatagggaaatacttttctagaaactttagctctaattcttcccatgtttgaatagtcccattaggcaaagttaataactagtctttagcttta |
20265 |
T |
|
| Q |
218 |
ccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||| |||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
20264 |
ccggttaaagtgaacgtgaatagcctgagtttcttttggtcttctgtaacatttgctggaggaacacaaaactc |
20191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 25853 - 26128
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25853 |
tggacatctcttcagtaacaaattgaacctttcccaagcatcatacagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaag |
25952 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| |||||||||| |
|
|
| T |
25953 |
tacttggacatagggaaatatttttctagaaacttaagctctaactcctcccatgtttgaatagtcccattcggtaaagttaataaccaatctttagctt |
26052 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||| | |||| ||| ||||||||||| |||||| |
|
|
| T |
26053 |
taccggttaaagtgaacgggaatagcctgagtttcttttggtcttcagtaacagttgctggaggaacacaaaactc |
26128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 34142145 - 34142409
Alignment:
| Q |
16 |
tggacatctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaag |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34142145 |
tggacatctcttcagtggcaaattgaacctttcccaagcatcatacaatgattcactctcaccttgccgaaagcttgctatttcttgcttcttatccaag |
34142244 |
T |
|
| Q |
116 |
tacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
215 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142245 |
tacttggacatagggaa-----------gaaacttcagctctaattcttcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctt |
34142333 |
T |
|
| Q |
216 |
taccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||| ||||||||||||| || ||||| |||||||||||||||| | || |||| ||||||||||| |||||| |
|
|
| T |
34142334 |
taccggttaaagtgaacggaaatagcctaagtttcttttggtcttcagtgacgtttgctggaggaacacaaaactc |
34142409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 22141204 - 22141066
Alignment:
| Q |
20 |
catctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtact |
119 |
Q |
| |
|
|||||||| ||||||||||| || |||||| |||||||||| ||||| ||| || |||||||| ||| | | || ||||| ||||||||| | || | |
|
|
| T |
22141204 |
catctcttaagaagcaaattaaatctttcctaagcatcatatagtgactcactctccccttgccgaaagatggaaatctcttgtttcttatcccaatatt |
22141105 |
T |
|
| Q |
120 |
tggacatagggaaatacttctctagaaacttaagctcta |
158 |
Q |
| |
|
|||||||||| || |||||||| | ||||||||||||| |
|
|
| T |
22141104 |
tggacataggaaagtacttctccaagaacttaagctcta |
22141066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 44 - 291
Target Start/End: Original strand, 13274 - 13521
Alignment:
| Q |
44 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
143 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||| ||| | ||||| ||||| |||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
13274 |
ctttcccaagcatcataaagtgactcaccttccccttgcctaaagttggctatctcttgtttcttatccaggtacttggacatagggaaaaacttctcta |
13373 |
T |
|
| Q |
144 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
243 |
Q |
| |
|
|||||| ||||| | || ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
13374 |
aaaacttcagctccagctcatcccatgtttggatggtcccattaggaaatgtcaataaccagtctttagctttaccggttaaagtgaacgggaatagcct |
13473 |
T |
|
| Q |
244 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
13474 |
gagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
13521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 44 - 291
Target Start/End: Complemental strand, 11573 - 11326
Alignment:
| Q |
44 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
143 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| ||||||| ||| | ||||| ||||| |||||||| | ||||||||||||||||||| |||||| || |
|
|
| T |
11573 |
ctttcccaatcatcataaagtgactcaccttccccttgcctaaagttggctatctcttgtttcttatctaggtacttggacatagggaaaaacttctata |
11474 |
T |
|
| Q |
144 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
243 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11473 |
aaaacttaagctctaactcatcccatgtttgaatggtctcattaggaaaagtcaataaccagtctttagctttaccggttaaagtgaacgggaatagcct |
11374 |
T |
|
| Q |
244 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||||||||| || || | || ||||| ||||||||||| |||||| |
|
|
| T |
11373 |
gagtttctttttgtgttcactaaaatttgctggaggaacacaaaactc |
11326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 291
Target Start/End: Complemental strand, 13843794 - 13843547
Alignment:
| Q |
44 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
143 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| || ||| ||| | ||||| |||| |||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
13843794 |
ctttcccaagcatcataaagtgactcaccttccccgtgcataaagttggctatcccttgtttcttatccaggtacttggacatagggaaaaacttctcta |
13843695 |
T |
|
| Q |
144 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
243 |
Q |
| |
|
|||||| || || || || || |||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
13843694 |
aaaacttcaggtccaactcatctcatgtttggatggtcccattcggcaaagtcaataaccagtctttagctttaccggttaaagtgaacgggaatagcct |
13843595 |
T |
|
| Q |
244 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
291 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
13843594 |
gagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
13843547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 48032 - 47862
Alignment:
| Q |
20 |
catctcttcagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtact |
119 |
Q |
| |
|
||||||||||||||||| || || || |||||| |||||||||||| |||| || ||||||| || |||| || ||||| ||||| ||| | || | |
|
|
| T |
48032 |
catctcttcagaagcaagttaaatctctcccaaacatcataaagtgtttcactctctccttgcctaaactttgcaatctcttgtttcttgtcccaatatt |
47933 |
T |
|
| Q |
120 |
tggacatagggaaatacttctctagaaac----ttaagctctaattcctcccatgtttgaatagtcccatt |
186 |
Q |
| |
|
|||||||||| || |||||||||| ||| ||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
47932 |
tggacataggaaattacttctctaagaacttaattaagctctaactcttcccatgtttgaatggttccatt |
47862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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