View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7513_low_8 (Length: 247)
Name: NF7513_low_8
Description: NF7513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7513_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 50886941 - 50886710
Alignment:
| Q |
16 |
ataaaacataaaaatgaggatttatgcatattctcacatttgaaacgagagaaagcgctatatcgaaatgaggaaaaatattcaaggttgtctctaaaat |
115 |
Q |
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| T |
50886941 |
ataaaacataaaaatgagaatttatgcatattctcacatttgaaacgagagaaagcgctctatcgaaatgaggaaaaatattcaaggtcgtctctgaaat |
50886842 |
T |
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| Q |
116 |
tttgaatgccctctgtgaaacatgaagtcgttaagttttttattacacgcaacacacatgcacgcaaacaatgtacaaactcgtgcgcgcacacactagg |
215 |
Q |
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| T |
50886841 |
tttgaatgccctctgtgaaacatgaaatcgttaagttttttattacacgcaacacacatgcacgcaaacaatgtacaaactcgtgcgcgcgcacactagg |
50886742 |
T |
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| Q |
216 |
tcaaaacatttggtgttgtgtaggtacacctt |
247 |
Q |
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| T |
50886741 |
tcaaaacatttggtgctgtgtaggtacacctt |
50886710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 50885292 - 50885052
Alignment:
| Q |
16 |
ataaaacataaaaatgaggatttatgcatattctcacatttgaaacgagagaaagc--gctatatcgaaatgaggaaaaatattcaaggttgtctctaaa |
113 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||||||||||| || ||||||||| |
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| T |
50885292 |
ataaaacataaaaatgagggtttatgcatattctcacatttgaaatgagaaaaagcttgctctatcaaaatgaggaaaaatattcagggccgtctctaaa |
50885193 |
T |
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| Q |
114 |
attttgaatgccctctgtgaaacatgaagtcgttaagt--tttttattacacgcaaca----cacatgcacgcaaacaatgtacaaactcgtgcgcgcac |
207 |
Q |
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| T |
50885192 |
attgtgaatgtcctatataaaatatgaagtaattaagtgttttttattacatgcaacatgcacgcatgcacacaaacaatgtacaaactcgtgcgtgcac |
50885093 |
T |
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| Q |
208 |
acactaggtcaaaacatttggtgttgtgta-ggtacacctt |
247 |
Q |
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| T |
50885092 |
acactacgtcaaaacatttgatgctatgtatggtacacctt |
50885052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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