View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7514_high_1 (Length: 599)
Name: NF7514_high_1
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 582
Target Start/End: Complemental strand, 47122823 - 47122235
Alignment:
| Q |
13 |
gagatgaaacatgtattttaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgat |
112 |
Q |
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| T |
47122823 |
gagatgaaacatgtatattaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgat |
47122724 |
T |
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| Q |
113 |
tataagtacttaggcttgcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaagg |
212 |
Q |
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| T |
47122723 |
tataagtacttaggcttgcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaagg |
47122624 |
T |
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| Q |
213 |
attatataaatttatccggaggatgatatttgagtcagagaagtatatggacactacagaatacaaataatatacttttaatcacttgtttagggactta |
312 |
Q |
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| T |
47122623 |
attatataaatttatccggaggatgacattggagtcagagaagtatatggacactacataatacaaataatatacttttagtcactcgtttaaggactta |
47122524 |
T |
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| Q |
313 |
aaaatgtannnnnnnnctttgtatggactacaaagtggatacaaagactaaaaacaaaattcactatatttgta-gaacccaaaactaattta------- |
404 |
Q |
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| T |
47122523 |
aaaatgtatttttgta--ttgtatggactacaaaatggatacaaagattaaaaacaaaattcactatatttgtaggaacccaaaactaatttaatcttat |
47122426 |
T |
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| Q |
405 |
----------accaaattatgtaaaagtagagatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacgagtaataggcacaca |
494 |
Q |
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| T |
47122425 |
ttaaaaaagtaccaaattatgtaaaagtagagatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacaagtaataggcacaca |
47122326 |
T |
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| Q |
495 |
actactaggaatataaacctaatacggtc--ctataagta-agtgatataatgatgaatgcatagagaaaaggttattgttagtaaaagaa |
582 |
Q |
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| T |
47122325 |
actactaggaatataaacctaatacggtcctctataagtatagtgatataatgatgaatgcatagagaaaaggtaattgttagtaaaagaa |
47122235 |
T |
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