View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7514_high_13 (Length: 250)
Name: NF7514_high_13
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_high_13 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 50026777 - 50027011
Alignment:
| Q |
16 |
atgaggagaagagctaacctgaactgtgacatctttcatagcaaaatcatcgatatcagaatcagtttttgaagtggctaatccaaaatcagctttcatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50026777 |
atgaggagaagagctaacctgaactgtgacatctttcatagcaaaatcatcgatatcagaatcagtttttgaagtggctaatccaaaatcagctttcatt |
50026876 |
T |
|
| Q |
116 |
gatttgcatgaatccaatgaacatgacctagttctcccaaatggttcatcatgctctaagctagtttcaccaatctcaaaaaggacattggactcacatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50026877 |
gatttgcatgaatccaatgaacatgacctagttctcccaaatggttcatcatgctctaagctagtttcaccaatctcaaaaaggacattggactcacatt |
50026976 |
T |
|
| Q |
216 |
cacccttttggataacagatccatcttctacacaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
50026977 |
cacccttttggataacagatccatcttctacacaa |
50027011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University