View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7514_high_14 (Length: 242)
Name: NF7514_high_14
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 49016121 - 49016332
Alignment:
| Q |
1 |
tcaagatgttcaaaagcttgttgagttggaaccaaaggctctatgtggcttagatctatacaatggaatccttatgcgctacgttacaacttctagtgca |
100 |
Q |
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| T |
49016121 |
tcaagatgttcaaaagcttgttgagttggaaccaaaggct----------tagatctatacaatggaatccttatgcgctacgttacaacttctagtgca |
49016210 |
T |
|
| Q |
101 |
tacttgggaaacacagaggatgctgtgaatttcgacatcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagaga |
200 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016211 |
tacttgggaaacacaga--atgctgtggatttcgacatcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagaga |
49016308 |
T |
|
| Q |
201 |
tagaacaaattgggttgttcaaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
49016309 |
tagaacaaattgggttgttcaaat |
49016332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 490643 - 490422
Alignment:
| Q |
3 |
aagatgttcaaaagcttgttgagttggaaccaaaggctctatgtggcttagatctatacaatggaatccttatgcgctacgttacaacttctagtgcata |
102 |
Q |
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| T |
490643 |
aagatgttaaaaagcttgttcagttggagccaaaggcattgtgtggcttagacttgtacaatggaatcctcatgcgttatgttacaacttctagtgcata |
490544 |
T |
|
| Q |
103 |
cttgggaaacacagaggatgctgtgaatttcgacatcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagata |
202 |
Q |
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| T |
490543 |
cttgggaaaaacagaagatgctgtggaatttgacatcatatattaccgcagtaaagatccattgactcctaggctttatgaagatataattgaagagata |
490444 |
T |
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| Q |
203 |
gaacaaattgggttgttcaaat |
224 |
Q |
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| T |
490443 |
gaacaaataggattgttcaaat |
490422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 213
Target Start/End: Original strand, 9071869 - 9072024
Alignment:
| Q |
58 |
atacaatggaatccttatgcgctacgttacaacttctagtgcatacttgggaaacacagaggatgctgtgaatttcgacatcacatattaccgtagtaaa |
157 |
Q |
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|||||||||||| || ||||| || |||||| |||||||||| ||| | |||||| ||||||||| | | || || ||||||||||| ||||| ||| |
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| T |
9071869 |
atacaatggaattctaatgcgttatgttacagcttctagtgcttacctaggaaaccaagaggatgcattagactttgatatcacatattatcgtagcaaa |
9071968 |
T |
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| Q |
158 |
gatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgg |
213 |
Q |
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| T |
9071969 |
gatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattgg |
9072024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 9059233 - 9059305
Alignment:
| Q |
138 |
tcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaat |
210 |
Q |
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|||| ||||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||| || ||||| |
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| T |
9059233 |
tcacgtattaccgtagcaaagatccaatgactcctaggctttatgaagacgtttttgaagagattgagcaaat |
9059305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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