View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7514_high_16 (Length: 240)
Name: NF7514_high_16
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 19974638 - 19974479
Alignment:
| Q |
80 |
aaatgtgcccttcaacttgatccagtattgaattctgctgtattaactttgttcaacttgtcacaggcacaaccttaaattactttttggatgacaaaat |
179 |
Q |
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| T |
19974638 |
aaatgtgcccttcaacttgatccagtattgaattctgctgtattaactttgttcaacttgtcacaggcacaaccttaaattactttttggacgacaaaat |
19974539 |
T |
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| Q |
180 |
caataaagccgagattcttttcccaggagttggttgttttttggttgcggtttgtctagg |
239 |
Q |
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| T |
19974538 |
caataaagccgagattcttttccctggagtgggttgctttttggttgcggtttgtctagg |
19974479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 19622008 - 19622142
Alignment:
| Q |
105 |
tattgaattctgctgtattaactttgttcaacttgtcacaggcacaaccttaaattactttttggatgacaaaatcaataaagccgagattcttttccca |
204 |
Q |
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| T |
19622008 |
tattgaattctactgaattaactttgttgaatttgtcacaggcacaacattgaattattttttggatgacaaaatcaataaagctgagattctttttcca |
19622107 |
T |
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| Q |
205 |
ggagttggttgttttttggttgcggtttgtctagg |
239 |
Q |
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| T |
19622108 |
ggagttggttgctttttagttgcagtttgtttagg |
19622142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 19978391 - 19978467
Alignment:
| Q |
157 |
aattactttttggatgacaaaatcaataaagccgagattcttttcccaggagttggttgttttttggttgcggtttg |
233 |
Q |
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| T |
19978391 |
aattactttttggatgacaaaatcaataaagctgagattctttttccaggagttggttgcttttttgttgcagtttg |
19978467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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