View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7514_high_18 (Length: 222)

Name: NF7514_high_18
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7514_high_18
NF7514_high_18
[»] chr8 (4 HSPs)
chr8 (42-217)||(14784130-14784305)
chr8 (68-156)||(38977089-38977177)
chr8 (68-156)||(39008187-39008275)
chr8 (68-156)||(32970831-32970919)
[»] chr2 (1 HSPs)
chr2 (42-217)||(33573212-33573387)
[»] chr1 (1 HSPs)
chr1 (90-217)||(33366189-33366316)
[»] chr5 (1 HSPs)
chr5 (128-212)||(29193619-29193703)
[»] chr3 (2 HSPs)
chr3 (68-156)||(18453797-18453885)
chr3 (68-156)||(52279275-52279363)
[»] chr4 (1 HSPs)
chr4 (68-140)||(14871253-14871325)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 14784305 - 14784130
Alignment:
Q  42 aggagaacatggaggacaattgatggcagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14784305 aggagaacatggaggacaattgatggcagctgttggtaaagatgcaaacagccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 14784206  T
Q  142 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14784205 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcag 14784130  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 38977089 - 38977177
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  38977089 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 38977177  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 39008187 - 39008275
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  39008187 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 39008275  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 32970831 - 32970919
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | ||||| || | ||  ||||| ||||| |||||||||||||||||||| ||||||    
T  32970831 cagctgttggtaaagatggtaacaatcaaatgatacccatagcctttgttgttgtggaagctgaaacaaaagattcatgggattggttt 32970919  T

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Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 33573212 - 33573387
Alignment:
Q  42 aggagaacatggaggacaattgatggcagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 141  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33573212 aggagaacatggaggacaattgatggcagttgttggtaaagacgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 33573311  T
Q  142 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatttcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33573312 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatctcag 33573387  T

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Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 33366316 - 33366189
Alignment:
Q  90 caaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactata 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33366316 caaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactata 33366217  T
Q  190 caacacaagcaatatgcattcatttcag 217  Q
    ||||||||||||||||||||||| ||||    
T  33366216 caacacaagcaatatgcattcatctcag 33366189  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 29193619 - 29193703
Alignment:
Q  128 cagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29193619 cagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaaacaatatgcattcat 29193703  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 18453885 - 18453797
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  18453885 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 18453797  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 52279363 - 52279275
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  52279363 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 52279275  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 14871253 - 14871325
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaaga 140  Q
    ||||||||||||||||||  ||||| |||||| | ||||| |||| ||| ||||| ||||| ||||| |||||    
T  14871253 cagctgttggtaaagatggtaacaatcaaatgatccccatagcttttgctgttgtggaagctgaaactaaaga 14871325  T

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