View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7514_high_2 (Length: 531)
Name: NF7514_high_2
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_high_2 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 91 - 531
Target Start/End: Original strand, 49015689 - 49016129
Alignment:
| Q |
91 |
attaacagaggagcttcaagaagcaactctcagtgttaatgggaagtgcattgttgcaaagttgctaactacaacacttgtgggaactggttatggattg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49015689 |
attaacagaggagcttcaagaagcaactctcagtgttaatgggaagtgcattgttgcaaagttgctaactacaacacttgtgggaactggttatggattg |
49015788 |
T |
|
| Q |
191 |
tctaacaatggtatttttatttgtttttatgatcacatgagatacttgttatctttatcaatatggaaagtaaattttgattttgaaataagaaagttat |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49015789 |
tctaacaatggtatttttatttgtttttatgatcacatgagatacttgttatctttatcaatacggaaagtaaattttgattttgaaataagaaagttat |
49015888 |
T |
|
| Q |
291 |
tacaattttaaatatacatgcatcaaatgctgtttttgttttaaatatttgtaggagtctttcttaggtaccctattgttggattcattaaccgaatgca |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49015889 |
tacaattttaaatatacatgcatcaaatgctgtttttgttttaaatatttgtaggagtctttcttaggtaccctattgttggattcattaaccgaatgca |
49015988 |
T |
|
| Q |
391 |
gtcatcagggacatgtttagatagtttggataatcaaatggtcacagcgtgtccatgggactctagaatcaagggagaattctatcaccaaacaacattt |
490 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49015989 |
gtcattagggacatgtttagatagtttggataatcaaatggtcacagcgtgttcatgggactctagaatcaagggagaattctatcaccaaacaacattt |
49016088 |
T |
|
| Q |
491 |
agtatttccttgtcaatcgtaaaacactttattcaagatgt |
531 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49016089 |
agtatttccttgtcaatcgtaaaaaactttattcaagatgt |
49016129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 49015609 - 49015652
Alignment:
| Q |
16 |
atcgtagagtatagtagaaactaaaattgatctgtttaacatag |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49015609 |
atcgtagagtatagtagaaactaaaattgatctgtttaacatag |
49015652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 366 - 531
Target Start/End: Complemental strand, 490802 - 490637
Alignment:
| Q |
366 |
ttgttggattcattaaccgaatgcagtcatcagggacatgtttagatagtttggataatcaaatggtcacagcgtgtccatgggactctagaatcaaggg |
465 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| | |||||||||||| |||| ||| |||||||||| ||||||||| ||||| ||||| |
|
|
| T |
490802 |
ttgttggattcaacaaccgaatacagtcatcagggacatgtctggatagtttggatgatcagatgagcacagcgtgtatatgggactcaagaattaaggg |
490703 |
T |
|
| Q |
466 |
agaattctatcaccaaacaacatttagtatttccttgtcaatcgtaaaacactttattcaagatgt |
531 |
Q |
| |
|
| |||| || || | ||| ||||||||||| |||| || || |||||| |||| ||| ||||||| |
|
|
| T |
490702 |
accattcaattacgatacagcatttagtattcccttatctattgtaaaatacttcattgaagatgt |
490637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University