View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7514_high_8 (Length: 400)
Name: NF7514_high_8
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 59 - 307
Target Start/End: Original strand, 6395194 - 6395443
Alignment:
| Q |
59 |
tctggaaatttatgagatcccgtaagatcaaaggtaagg-gaagactttcttttttactagtttaagagtttatagtgttactgttcctatagtatatat |
157 |
Q |
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| T |
6395194 |
tctggaaatttttgagatcccgtaagatcaaaggtaaagagaagacttt-ttttttactagtttaagagtttatagtgttactgctcctatagtatatat |
6395292 |
T |
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| Q |
158 |
atcatacaaaatgcatatgcaaaa-aataggtacattataacagttgatgtttgttggccaactatgaaatttcttcccattctcatcaattttttctga |
256 |
Q |
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| T |
6395293 |
ctcatataaaatgcatatgcaaaaaaataggtacattataacagttgatacatgttagccaactatgaaatttcttcccattctcatcaatttcttctga |
6395392 |
T |
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| Q |
257 |
atttgaaactggtttttataatttgtgtgttcaatttgcagattcttctca |
307 |
Q |
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| T |
6395393 |
atttgaaactggtttttataatttgtgtgttcaatttgcagattcttctca |
6395443 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 43597806 - 43597889
Alignment:
| Q |
222 |
tgaaatttcttcccattctcatcaattttttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttct |
305 |
Q |
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| T |
43597806 |
tgaaatttcttaccattctcatcaatttcttctgaatttgaagctaatttttctagtatatgtgttcaatttgtagattcttct |
43597889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 33237043 - 33237097
Alignment:
| Q |
309 |
ctgaaaacctattcatgggatgcaaaagcacttgtagctctagctgctttcactt |
363 |
Q |
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| T |
33237043 |
ctgaaaacctattcatgggatgcaaaagcacttatagctctagctgctttcactt |
33237097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 33221218 - 33221260
Alignment:
| Q |
321 |
tcatgggatgcaaaagcacttgtagctctagctgctttcactt |
363 |
Q |
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| T |
33221218 |
tcatgggatgcaaaagcacttataactctagctgctttcactt |
33221260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 26376329 - 26376382
Alignment:
| Q |
310 |
tgaaaacctattcatgggatgcaaaagcacttgtagctctagctgctttcactt |
363 |
Q |
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| T |
26376329 |
tgaaaacctactcacgggatgcaaaagcacttgtagctctagctgctttcactt |
26376382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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