View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7514_high_9 (Length: 384)
Name: NF7514_high_9
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 3 - 366
Target Start/End: Original strand, 7914698 - 7915061
Alignment:
| Q |
3 |
gaaacatgttattttctttatatatcgtgtagacaatctaccaccaatctaatgctaaagaatatcctaaagtgtctctgtttgattcaggtactattgc |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7914698 |
gaaacatgttattttctttatatatcgcgtagataatctaccaccaatctaatgctaaagaatatcctaaagtgtctctgtttgattcaggtactattgc |
7914797 |
T |
|
| Q |
103 |
tgaattcttcaagccaaatcaaattacgtagttaatatgttagtcgtcaagcaaatgtagcaccttataatgtagataggatgattatttttctctactg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7914798 |
tgaattcttcaagccaaatcaaattacgtagttaatatgttagtcgtcaagaaaatgtagcaccttataatgtagataggatgattatttttctctattg |
7914897 |
T |
|
| Q |
203 |
aaattatatgagccacttttaatgatcaaagttaaaacaagttgaaacatctaacaaagttgtgcgacaaacgaaaaaagaaatatcattattggagtat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7914898 |
aaattatatgagccacttttaatgatcaaagttaaaacaagttgaaaaatctaacaaagttgtgcgacaaacgaaaaaagaaatatcattattggagtat |
7914997 |
T |
|
| Q |
303 |
cattgatgtcaatcttgaacttccccataactctttctcactatgatttacctacctaacaaga |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7914998 |
cattgatgtcaatcttgaacttccccataactctttctcactatgatttacctacctaacaaga |
7915061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 348
Target Start/End: Original strand, 7903931 - 7904061
Alignment:
| Q |
220 |
tttaatgatcaaagttaaaacaagttgaaacatctaacaaagttgtgcgacaaacgaaaaaagaa--atatcattattggagtatcattgatgtcaatct |
317 |
Q |
| |
|
|||||||||| |||| |||||| | |||||||| |||| || || || |||| | |||||| || || ||||||||| |||| |||||||| |||||| |
|
|
| T |
7903931 |
tttaatgatccaagtaaaaacatgctgaaacatttaactaaattatgtgacataaaaaaaaaaaataatgtcattattgtagtaccattgatgccaatct |
7904030 |
T |
|
| Q |
318 |
tgaacttccccataactctttctcactatga |
348 |
Q |
| |
|
||| ||| ||||| ||||||||||||||||| |
|
|
| T |
7904031 |
tgatctttcccatgactctttctcactatga |
7904061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University