View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7514_low_12 (Length: 347)
Name: NF7514_low_12
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 10847647 - 10847331
Alignment:
| Q |
20 |
ctgaatagagacagaaattgatgttatcattcccttcgtcactgttgttgtttatacgttcttaggttaccaaatcattagcaaaaatatatttattcta |
119 |
Q |
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| T |
10847647 |
ctgaatagagacagaaattgatgctatcattcccttcgtcactgttgttgtttatacgttcttaggttaccaaatcattagcaaaaatatatttattcta |
10847548 |
T |
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| Q |
120 |
agagcagtaattaagatttct--taatatgatccattcgtacaaaagttattatgagnnnnnnnnnnnaataataaaaaattattatgagttgaaatttg |
217 |
Q |
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| T |
10847547 |
agaggagtaattaagatttctaatatgatgatccattc--acaaaagttattatgagttttttcttttaataataaaaaattattatgagttgaaatttg |
10847450 |
T |
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| Q |
218 |
gatagcatcatcgatattattagaacaatgcacaccaatggatcagataaggttctaaccaatcacaaattggacaatttaaaataatttattgtactta |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10847449 |
gatagcatcatcgatattattagaacaatgcacatcaatggatcagataaggttctaaccaatcacaaattggacaatttaaaataatttattgtactta |
10847350 |
T |
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| Q |
318 |
taattataaccattatatt |
336 |
Q |
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||||||||||||||||||| |
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| T |
10847349 |
taattataaccattatatt |
10847331 |
T |
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