View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7514_low_3 (Length: 457)
Name: NF7514_low_3
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 99 - 306
Target Start/End: Original strand, 14785374 - 14785581
Alignment:
| Q |
99 |
tccccataatggaacaaaacacataatttaattccaccacttnnnnnnnnntgattttttgtgccactgtgtcaaacccaatacaatttctcattttgtg |
198 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14785374 |
tccccataattgaacaaaacacataatttaattccaccactttaaaaaaaacgattttttgtgccactgtgtcaaacccaatacaatttctcattttatg |
14785473 |
T |
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| Q |
199 |
ttgtcggtagtgtcgtaagtggaattgaagtggtatctttgttttgttttattttcaaaacccaatagagactcctaaagaatagcaactaaataatccc |
298 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14785474 |
ttgtcagtagtgtcgtaaatggaattgaagtggtatctttgttttgttttattttcaaaacccaatagagactcctaaagaatagcaactaaagaatccc |
14785573 |
T |
|
| Q |
299 |
atcaattt |
306 |
Q |
| |
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|||||||| |
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| T |
14785574 |
atcaattt |
14785581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 14785656 - 14785718
Alignment:
| Q |
381 |
tgaacccagatgctgaatacttccatatggtcaacagaacagcaacaaatatgagaaagacat |
443 |
Q |
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| T |
14785656 |
tgaacccagatgctgaatacttccatatggtcaacagaacagcaacaaatatgagaaagacat |
14785718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 99 - 306
Target Start/End: Complemental strand, 29186961 - 29186756
Alignment:
| Q |
99 |
tccccataatggaacaaaacacataatttaattccaccacttnnnnnnnnntgattttttgtgccactgtgtcaaacccaatacaatttctcattttgtg |
198 |
Q |
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| T |
29186961 |
tccccataatggaacaaaacacataatttaattccaccacttaaaaaaaaacgattttttgtgccactgtgtcaaacccaatacaatttctcatt--gtg |
29186864 |
T |
|
| Q |
199 |
ttgtcggtagtgtcgtaagtggaattgaagtggtatctttgttttgttttattttcaaaacccaatagagactcctaaagaatagcaactaaataatccc |
298 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
29186863 |
ttgtcggtattgtcgtaagtggaattgaagtggtatctttgttttgttttattttcaaaacccaatagagactcctaaagaatgacaactaaagaatccc |
29186764 |
T |
|
| Q |
299 |
atcaattt |
306 |
Q |
| |
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|||||||| |
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|
| T |
29186763 |
atcaattt |
29186756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 29186681 - 29186619
Alignment:
| Q |
381 |
tgaacccagatgctgaatacttccatatggtcaacagaacagcaacaaatatgagaaagacat |
443 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29186681 |
tgaacccagatgctgaataattccatatggtcaacaaaacagcaacaaatatgagaaagacat |
29186619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 306
Target Start/End: Complemental strand, 33572070 - 33571860
Alignment:
| Q |
99 |
tccccataatggaacaaaacacataatttaattccaccacttnnnnnnnnn--tgattttttg-tgccactgtgtcaaacccaatacaatttctcatttt |
195 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33572070 |
tccccataatgcaacaaaacacataatttaattctaccactttataaaaaaaatgatttttttatgccactgtgtcaaacccaatacaatttctcatttt |
33571971 |
T |
|
| Q |
196 |
gtgttgtcggtagtgtcgtaagtggaattgaagtggtatctttgttttgttttattttcaaaacccaatagagactcctaaagaatagcaactaaataat |
295 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
33571970 |
gtgttgtcggtattgtcgtcagtggaattgaagtggtatctttgttttgttttattttcgaaacccaatagagactcctaaagaatagcaactaaagaat |
33571871 |
T |
|
| Q |
296 |
cccatcaattt |
306 |
Q |
| |
|
||||||||||| |
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|
| T |
33571870 |
cccatcaattt |
33571860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 33571785 - 33571723
Alignment:
| Q |
381 |
tgaacccagatgctgaatacttccatatggtcaacagaacagcaacaaatatgagaaagacat |
443 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33571785 |
tgaacccatatgctgaataattccatatggtcaacagaacagcaacaaatatgagaaagacat |
33571723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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