View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7514_low_7 (Length: 415)
Name: NF7514_low_7
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7514_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 870239 - 870501
Alignment:
| Q |
16 |
atcaaaacaatcactcttaaaaatgttaaatttgcatttagagtttaagtaaacatagcaaagaataaaacctagattggaaaaggtgagnnnnnnnnaa |
115 |
Q |
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| T |
870239 |
atcaaaacaatcactcttaaaaatgttaaatttgcatttagagtttaattaaacatagcaaagaataaaacctagattggaaaaggtgagttttttttaa |
870338 |
T |
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| Q |
116 |
gcaataaaaataattagatagacccaattaagatctaagcactataacacaattacaaacagaaatgaacacatatcttgaacttgggttacnnnnnnnt |
215 |
Q |
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| T |
870339 |
gcaataaaaataattagatagacccaattaagatctaagcactataacacaattacaaaaagaaatgaacacatatcttgaatttgggttacaaaaaaat |
870438 |
T |
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| Q |
216 |
tgcatgaaaatgtaaaatttattgaattatgaatgaatccagctaagttaaagcaaaaagggt |
278 |
Q |
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| T |
870439 |
tgcatgaaaatgtaaaatttattgaattatgaatgaatccagctaagttaaagcaaaaagggt |
870501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 301 - 397
Target Start/End: Original strand, 870558 - 870654
Alignment:
| Q |
301 |
aaatgcttactacgcatgatgaattgatgtgaagatctgaaattagggttaggttacaaagctgttgtcgagaaatgtgagtgagagagatataaat |
397 |
Q |
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| T |
870558 |
aaatgcttactacgcatgatgaattgatgtgaagatctgaaattagggttaggttacaaagctgttgttgagaaatgtgagtgagagagatataaat |
870654 |
T |
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