View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7514_low_8 (Length: 413)

Name: NF7514_low_8
Description: NF7514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7514_low_8
NF7514_low_8
[»] chr1 (20 HSPs)
chr1 (18-255)||(24065123-24065360)
chr1 (48-259)||(29115351-29115562)
chr1 (18-259)||(5185261-5185501)
chr1 (45-255)||(41117126-41117336)
chr1 (54-255)||(30033528-30033729)
chr1 (45-259)||(4614827-4615041)
chr1 (154-259)||(3603510-3603615)
chr1 (45-259)||(40490003-40490217)
chr1 (55-208)||(13288034-13288187)
chr1 (18-259)||(49702336-49702576)
chr1 (159-255)||(6507904-6508000)
chr1 (90-201)||(24083357-24083468)
chr1 (115-254)||(34696097-34696236)
chr1 (108-254)||(21701467-21701613)
chr1 (90-178)||(9361749-9361837)
chr1 (88-254)||(49372298-49372464)
chr1 (43-254)||(52147703-52147914)
chr1 (51-252)||(24427492-24427692)
chr1 (134-255)||(50309337-50309458)
chr1 (218-251)||(28385221-28385254)
[»] chr2 (19 HSPs)
chr2 (20-259)||(11818432-11818670)
chr2 (45-255)||(36641296-36641506)
chr2 (54-255)||(16206485-16206686)
chr2 (18-259)||(11553236-11553478)
chr2 (43-254)||(2058643-2058854)
chr2 (102-259)||(33650871-33651028)
chr2 (106-255)||(23379867-23380015)
chr2 (43-229)||(27267907-27268094)
chr2 (113-254)||(20661198-20661339)
chr2 (102-241)||(14231017-14231156)
chr2 (116-255)||(23761368-23761507)
chr2 (116-255)||(23789512-23789651)
chr2 (45-191)||(44886232-44886378)
chr2 (108-177)||(11502322-11502391)
chr2 (116-251)||(23762505-23762640)
chr2 (218-259)||(26501264-26501305)
chr2 (218-255)||(30848315-30848352)
chr2 (134-203)||(41655380-41655449)
chr2 (208-264)||(7895972-7896028)
[»] chr8 (22 HSPs)
chr8 (18-259)||(2246710-2246951)
chr8 (77-255)||(953639-953817)
chr8 (18-259)||(26931848-26932091)
chr8 (54-255)||(14505667-14505868)
chr8 (54-255)||(15990403-15990604)
chr8 (55-255)||(37590030-37590230)
chr8 (108-255)||(14657699-14657846)
chr8 (116-251)||(27978753-27978888)
chr8 (116-251)||(28036022-28036157)
chr8 (98-255)||(17837147-17837304)
chr8 (114-255)||(34723846-34723987)
chr8 (106-255)||(35285032-35285181)
chr8 (102-254)||(10601088-10601240)
chr8 (108-245)||(1186545-1186682)
chr8 (113-222)||(4518359-4518468)
chr8 (97-245)||(19299024-19299172)
chr8 (115-239)||(42080471-42080595)
chr8 (134-254)||(23558678-23558798)
chr8 (214-255)||(7670232-7670273)
chr8 (218-255)||(13700129-13700166)
chr8 (218-255)||(22897971-22898008)
chr8 (227-259)||(19382633-19382665)
[»] chr6 (15 HSPs)
chr6 (18-259)||(23508839-23509080)
chr6 (20-248)||(16416513-16416741)
chr6 (54-255)||(34355737-34355938)
chr6 (108-255)||(1493235-1493382)
chr6 (108-259)||(9959227-9959378)
chr6 (152-245)||(187079-187172)
chr6 (106-255)||(31029126-31029275)
chr6 (102-254)||(30140932-30141084)
chr6 (138-259)||(13768183-13768304)
chr6 (90-170)||(13825454-13825534)
chr6 (90-201)||(10910512-10910623)
chr6 (108-255)||(16890210-16890357)
chr6 (45-201)||(30588912-30589068)
chr6 (213-254)||(35087841-35087882)
chr6 (218-254)||(6695689-6695725)
[»] chr4 (22 HSPs)
chr4 (18-259)||(13685918-13686159)
chr4 (50-259)||(37061038-37061247)
chr4 (54-255)||(30190940-30191141)
chr4 (54-255)||(30859309-30859510)
chr4 (78-255)||(16431348-16431525)
chr4 (54-255)||(55227558-55227759)
chr4 (45-251)||(16582335-16582541)
chr4 (102-259)||(54027691-54027848)
chr4 (51-254)||(18878117-18878320)
chr4 (108-252)||(20527775-20527919)
chr4 (108-259)||(4235313-4235464)
chr4 (102-259)||(27087436-27087593)
chr4 (102-259)||(27066335-27066492)
chr4 (102-254)||(12355218-12355370)
chr4 (106-254)||(34301807-34301955)
chr4 (97-245)||(54823658-54823806)
chr4 (18-259)||(4462486-4462723)
chr4 (51-156)||(14263982-14264087)
chr4 (84-245)||(26949203-26949363)
chr4 (102-139)||(27066649-27066686)
chr4 (102-139)||(27066843-27066880)
chr4 (215-255)||(11790857-11790897)
[»] chr7 (21 HSPs)
chr7 (18-259)||(33611022-33611263)
chr7 (45-259)||(48100729-48100943)
chr7 (97-255)||(13014956-13015114)
chr7 (45-255)||(15633166-15633376)
chr7 (32-259)||(48770036-48770263)
chr7 (55-255)||(32480162-32480362)
chr7 (118-255)||(3896475-3896612)
chr7 (106-255)||(47081645-47081794)
chr7 (107-255)||(8118792-8118940)
chr7 (43-259)||(11343028-11343243)
chr7 (113-252)||(24226203-24226342)
chr7 (98-255)||(30502496-30502653)
chr7 (90-255)||(17238666-17238831)
chr7 (51-254)||(41601376-41601579)
chr7 (53-255)||(27458083-27458285)
chr7 (98-202)||(3205177-3205281)
chr7 (146-259)||(27810574-27810687)
chr7 (198-259)||(26016618-26016679)
chr7 (118-251)||(3960065-3960198)
chr7 (218-255)||(29961970-29962007)
chr7 (218-259)||(42510026-42510067)
[»] chr5 (20 HSPs)
chr5 (18-259)||(19237576-19237811)
chr5 (43-255)||(2157770-2157982)
chr5 (54-255)||(22292325-22292526)
chr5 (43-254)||(19741524-19741735)
chr5 (18-259)||(36044827-36045068)
chr5 (147-259)||(23622542-23622654)
chr5 (38-259)||(29955453-29955671)
chr5 (102-254)||(29754948-29755099)
chr5 (97-255)||(18759705-18759862)
chr5 (43-189)||(34919988-34920134)
chr5 (102-251)||(5335206-5335355)
chr5 (54-252)||(28246203-28246405)
chr5 (115-211)||(40299909-40300005)
chr5 (20-126)||(23622432-23622538)
chr5 (173-254)||(13948783-13948864)
chr5 (211-254)||(16088654-16088697)
chr5 (54-255)||(21092153-21092351)
chr5 (229-259)||(16569540-16569570)
chr5 (227-255)||(7871937-7871965)
chr5 (108-164)||(16088569-16088625)
[»] chr3 (26 HSPs)
chr3 (45-259)||(49499347-49499561)
chr3 (45-255)||(16739423-16739633)
chr3 (96-259)||(18357095-18357259)
chr3 (58-255)||(6006028-6006225)
chr3 (51-255)||(17790095-17790299)
chr3 (51-255)||(19098537-19098741)
chr3 (160-258)||(35906922-35907020)
chr3 (106-255)||(8566012-8566161)
chr3 (54-255)||(31228184-31228385)
chr3 (147-264)||(36144765-36144882)
chr3 (120-254)||(29372946-29373080)
chr3 (45-259)||(18342570-18342786)
chr3 (51-251)||(31809105-31809305)
chr3 (108-254)||(31935240-31935386)
chr3 (116-254)||(31973506-31973644)
chr3 (108-244)||(31660977-31661113)
chr3 (108-255)||(19602912-19603059)
chr3 (53-251)||(38015060-38015257)
chr3 (97-255)||(53437525-53437682)
chr3 (20-165)||(19770609-19770754)
chr3 (98-255)||(53394825-53394981)
chr3 (218-255)||(4479866-4479903)
chr3 (218-255)||(14485654-14485691)
chr3 (36-80)||(36144722-36144766)
chr3 (218-255)||(16877963-16878000)
chr3 (218-251)||(45004299-45004332)
[»] scaffold0031 (1 HSPs)
scaffold0031 (50-264)||(44418-44633)
[»] scaffold0341 (2 HSPs)
scaffold0341 (159-255)||(1929-2025)
scaffold0341 (159-255)||(9585-9681)
[»] scaffold0040 (1 HSPs)
scaffold0040 (98-255)||(62481-62638)
[»] scaffold0643 (1 HSPs)
scaffold0643 (102-254)||(1042-1194)
[»] scaffold0019 (1 HSPs)
scaffold0019 (115-251)||(73335-73471)
[»] scaffold0011 (1 HSPs)
scaffold0011 (90-201)||(191051-191162)
[»] scaffold0789 (1 HSPs)
scaffold0789 (108-254)||(4210-4356)
[»] scaffold0013 (1 HSPs)
scaffold0013 (102-212)||(42466-42576)
[»] scaffold0198 (1 HSPs)
scaffold0198 (196-255)||(21815-21874)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 24065123 - 24065360
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24065123 tgtgatgccttccatgctaatcgagatgacacttctgaatttgggtgcattatctcatcatgccggtctctgtttagttctttctttaccaactttaggg 24065222  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||     
T  24065223 tggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttattttcacatacccgattg 24065322  T
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||||| | ||||||||||||||||| |||||||||    
T  24065323 tattgaacttcttattattaatgaaatgctataagcat 24065360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 29115351 - 29115562
Alignment:
Q  48 acttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgagg 147  Q
    |||| ||||||||  |||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||    
T  29115351 acttttgaatttgagtgcattatctcatcttgtcggtctttgttcagttctttctttaccaactctagggtgtagtttgttagacgacaagcaaacgagg 29115450  T
Q  148 ttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgtt 247  Q
    |||||||||||| || | ||||   |||||||||||||||||  |||||||||||||| |||||| ||| ||| |||||| |||||||||||| |||| |    
T  29115451 ttgctcatgttcctgtaagagaggtcacgttactagctagtcatgttgtttattttcatatacccgattgtatggaacctcttattattaatgcaatgat 29115550  T
Q  248 ataagcatattt 259  Q
    ||||||||||||    
T  29115551 ataagcatattt 29115562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 5185501 - 5185261
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    ||||||||||||||| ||| |||||| |||   |||||||||||||||||||| |  ||||||||  ||||  ||| || |||||||||||||| |||||    
T  5185501 tgtgatgccttccatactactcgagacgactactctgaatttggatgcattattttttcatgtcgtactctagttaatt-tttctttaccaactctaggg 5185403  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    |||||||||||| || |||| | || ||||||| ||||||||||||| |||||  ||| |||| |||||||||||   |||||||| | |||||| | ||    
T  5185402 tggagtttgttaagcgacaaaccaatgaggttgttcatgttcttgcaagagaagtcacattaccagctagtcccgccatttatttttatatacccgaata 5185303  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||  | |||||||||||||||||||||||||||||||    
T  5185302 tattgaatatcttattattaatgaaatgttataagcatattt 5185261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 41117126 - 41117336
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    ||||| || |||||||| |||||||| || || ||||| ||  |||||| | |||| ||| |||||| | |||||||||||||||||| |||||| || |    
T  41117126 gacacatccgaatttggctgcattatttcttcttgtcgttcgttgtttactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatg 41117225  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||   ||||||||| | |||||||||| |||| || |||||||||| ||||||||    
T  41117226 aggttgctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttgagatacccaattgtattcaaactattattatcaatgaaat 41117325  T
Q  245 gttataagcat 255  Q
    | |||||||||    
T  41117326 gctataagcat 41117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 30033528 - 30033729
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || |||||||| ||| |||| | | |||||||| | |||| |||||||||||||||||||| |||||| | || ||||||||    
T  30033528 gaatttggatgcattatttcctcatgtcgttctttgttcaatactttcttttctaactctagggtggagtttgttaggcgacaagccagcgtggttgctc 30033627  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| | ||  ||||||   ||||||||||||  ||||||||| | |||||||||||||||||| || ||||||| ||||||||| |||||||    
T  30033628 atgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattatattgaaactcttattataaatgaaatgctataagc 30033727  T
Q  254 at 255  Q
    ||    
T  30033728 at 30033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 45 - 259
Target Start/End: Original strand, 4614827 - 4615041
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    |||| |||||||||||  |||||||| || || ||||| ||||| || |  ||||| |||||||||| |||||||||||||| ||||| |||| |||| |    
T  4614827 gacaattctgaatttgagtgcattatttcttcttgtcgatctctattcaactctttttttaccaactctagggtggagtttgctaggcgacaaacaaatg 4614926  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
     |||||||||||| ||||||| |||| ||||||| ||| ||||| |||||||| ||||| ||||| || ||| ||||||| ||  |||||||||||||||    
T  4614927 tggttgctcatgtgcttgcagaagaagccacgtttctaactagttccgttgttgattttaacataaccgattgtattgaatctcgtattattaatgaaat 4615026  T
Q  245 gttataagcatattt 259  Q
     |||||| |||||||    
T  4615027 tttataaacatattt 4615041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 3603615 - 3603510
Alignment:
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||| | ||| |||||||||| ||||||||||||||||||||||| |    
T  3603615 atgttcttgcaggagaggccacgttactagctactcccgttgtttattttcatatacacgattgtattgaacctcttattattaatgaaatgttataaac 3603516  T
Q  254 atattt 259  Q
    ||||||    
T  3603515 atattt 3603510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 40490217 - 40490003
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    |||||||  |||||||| || || || || |||||||| ||| | ||||| || |||||| | |||| |||||||||||||||||||| |||| | || |    
T  40490217 gacactttcgaatttggctgtatcatttcctcatgtcgttctttatttagctcattcttttctaactctagggtggagtttgttaggcgacaaaccaatg 40490118  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
    |||| ||||||| ||||||| |||||  | ||||||||| |||||||| |||||||||| | |||||  | ||||||||| || ||||||| ||||||||    
T  40490117 aggtcgctcatgctcttgcaagagaagtcgcgttactagttagtcccgctgtttattttgatataccggaatatattgaaactcttattatcaatgaaat 40490018  T
Q  245 gttataagcatattt 259  Q
    |  |||| |||||||    
T  40490017 gacataaacatattt 40490003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 13288034 - 13288187
Alignment:
Q  55 aatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctca 154  Q
    ||||||| |||||||| || || ||||| | ||| || || ||||  |||||||||| |||||||||||||| ||||| |||| |||| | |||||||||    
T  13288034 aatttgggtgcattatttcttcttgtcgatttcttttcagctcttcttttaccaactctagggtggagtttgctaggcgacaaacaaatgcggttgctca 13288133  T
Q  155 tgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacat 208  Q
    ||| |||||||||||| |||  || |||||||||||||||||||||||| ||||    
T  13288134 tgtgcttgcaggagaagccatatttctagctagtcccgttgtttattttaacat 13288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 49702336 - 49702576
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    |||||||| || || |||| |||||| ||||||||| ||||||  || |||||||| |||||||||||||| ||  ||| |||||||||||||| ||||     
T  49702336 tgtgatgcttttcacgctactcgagacgacacttctaaatttgagtgtattatctcttcatgtcggtctcttttcggttatttctttaccaactctagga 49702435  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    || |||||||||||  ||| |  |||| |||| |||||||| |||||| || |  ||  ||||||  || |||  ||||||||||| | |||||  |||     
T  49702436 tgaagtttgttaggtgacatgtcaacggggtttctcatgttattgcagaag-agacatattactaaataatccaattgtttattttaatataccagattg 49702534  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||||| ||||||||||||| ||| ||||| |||||||    
T  49702535 tattgaacctcttattattaatgagatgctataaacatattt 49702576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 6508000 - 6507904
Alignment:
Q  159 cttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| ||||  ||||||||||||||||| | ||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  6508000 cttgcagaagaagtcacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 6507904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 24083357 - 24083468
Alignment:
Q  90 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 189  Q
    ||||||||||||||| | |||| || ||||||||||||||||| |||||| |||| |||||||||||  |||||| ||||| |||||||  |||||||||    
T  24083357 tttagttctttcttttctaactctacggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttagctagtc 24083456  T
Q  190 ccgttgtttatt 201  Q
    ||| | ||||||    
T  24083457 ccgctatttatt 24083468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 34696236 - 34696097
Alignment:
Q  115 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaa 214  Q
    |||||||||||| ||||  ||||| ||| | ||||||||||  ||| | ||||||  ||||||| |||||||||| ||||||||||||||| |||||| |    
T  34696236 gggtggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggagagaccacgtttctagctagtctcgttgtttattttcatatacccca 34696137  T
Q  215 ttatattgaacctattattattaatgaaatgttataagca 254  Q
    || ||||||| || | ||||||||||| ||| ||||||||    
T  34696136 ttgtattgaaactttgattattaatgatatgatataagca 34696097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 21701613 - 21701467
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| | |||| |||| ||||||||||| |||| || ||||  ||||||   ||||||||||||  ||||||| | | |    
T  21701613 aactctagggtggagtttgttaggcgataagccaacgtggttgctcatgctctttcacgagaggccacgtctttagctagtcccgccgtttattatgata 21701514  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    ||| ||||| ||||||| || |||| |||||||||||| ||||||||    
T  21701513 tactcaattgtattgaaactcttatgattaatgaaatgctataagca 21701467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 9361749 - 9361837
Alignment:
Q  90 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgtt 178  Q
    ||||||||||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||||  |||||| ||||| |||||||    
T  9361749 tttagttctttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgtt 9361837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 49372298 - 49372464
Alignment:
Q  88 tgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctag 187  Q
    |||||| |||||| ||| | | || |||| || |||||||||| | |||| | |||  |||||||||||  |||||| || || |||||||| || ||||    
T  49372298 tgtttatttctttattttctagctataggatgaagtttgttagacgacaaactaacatggttgctcatgcacttgcaagaaaagccacgttaatatctag 49372397  T
Q  188 tcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    ||||  |||||||| | | |||||||||| ||||||| || ||||||| ||||||||| ||||||||    
T  49372398 tcccactgtttattataaaatacccaattgtattgaaactcttattatcaatgaaatgctataagca 49372464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 52147914 - 52147703
Alignment:
Q  43 atgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaa 142  Q
    ||||||| || ||||| || |||||||| || || ||| | ||| |||||| | |||| ||| |||||| || |||| ||||||||| || |||||| ||    
T  52147914 atgacacgtccgaattcggctgcattatttcttcttgttgttctttgtttactgctttattttccaactctaaggtgaagtttgttatgcgacaagctaa 52147815  T
Q  143 cgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaa 242  Q
    |  |||||| |||  ||||||| ||||| ||| |||||||||||||| ||  ||||||| | | |||| || || ||||||| || ||||||| ||| ||    
T  52147814 cagggttgcccattctcttgcaagagaagccatgttactagctagtcgcgcggtttattatgaaatactcatttgtattgaaactcttattatcaataaa 52147715  T
Q  243 atgttataagca 254  Q
    ||  ||||||||    
T  52147714 atactataagca 52147703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 252
Target Start/End: Complemental strand, 24427692 - 24427492
Alignment:
Q  51 tctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttg 150  Q
    ||||||||||| | |||||| || || ||| | ||| |||||| |||||| ||| | |||| |||||| |||||| |||||| |||||| || ||||| |    
T  24427692 tctgaatttggtttcattatttcttcttgttgttctttgtttacttctttattttctaactctagggtcgagtttattaggcgacaagccaatgaggtcg 24427593  T
Q  151 ctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttata 250  Q
    |||||  ||||||| ||||| |||| || ||||||  ||| | |||||||||| | |||| | ||| ||||||| || ||||||| ||  ||||| ||||    
T  24427592 ctcatactcttgcaagagaaaccacattcctagctgatcctgctgtttattttgaaatactc-attgtattgaaactcttattatcaagtaaatgctata 24427494  T
Q  251 ag 252  Q
    ||    
T  24427493 ag 24427492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 255
Target Start/End: Original strand, 50309337 - 50309458
Alignment:
Q  134 acaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattatt 233  Q
    |||||| |||||||||||||| | ||||||  ||||  ||||||   |||||||  |||| ||||||| | |||||| ||||  ||||||| | ||||||    
T  50309337 acaagccaacgaggttgctcacgctcttgcgagagataccacgtccttagctagctccgtagtttattatgacatactcaatagtattgaatccattatt 50309436  T
Q  234 attaatgaaatgttataagcat 255  Q
    |||||||||||| | |||||||    
T  50309437 attaatgaaatgctttaagcat 50309458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 28385221 - 28385254
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataa 251  Q
    ||||||| ||||||||||||||||||||||||||    
T  28385221 tattgaaactattattattaatgaaatgttataa 28385254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 11818670 - 11818432
Alignment:
Q  20 tgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtg 119  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  11818670 tgatgccttccatgctaatcgagatgacact-ctgaatttgggtgcattatctcatcatgtcagtctctgtttagttctttctttaccaactctagggtg 11818572  T
Q  120 gagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattata 219  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  11818571 gagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttattttcagatacccaattata 11818472  T
Q  220 ttgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  11818471 ttgaacctcttattattaatgaaatgctataagcatattt 11818432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 36641296 - 36641506
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    ||||| || |||||||| |||||||| || || ||||| ||  |||| | | |||| |||  ||||| | |||||||||||||||||| |||||| ||||    
T  36641296 gacacatccgaatttggctgcattatttcttcttgtcgttcgttgttcactgctttatttttcaactctcgggtggagtttgttaggcgacaagccaacg 36641395  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
    |||||||||||| |||||||  |||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||||||    
T  36641396 aggttgctcatgctcttgcaaaagaagccacattactagctagtcccgttgtttattttgagatacccaattatattgaaattattattatcaatgaaat 36641495  T
Q  245 gttataagcat 255  Q
      |||||||||    
T  36641496 actataagcat 36641506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 16206485 - 16206686
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || || ||||| ||| |||| | | |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||    
T  16206485 gaatttggatgcattatttcctcctgtcgttctttgttcattactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 16206584  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| | ||  ||||||   ||||||||||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||    
T  16206585 atgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagc 16206684  T
Q  254 at 255  Q
    ||    
T  16206685 at 16206686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 11553236 - 11553478
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttc-tttctttaccaactttagg 116  Q
    ||||||||||| ||||||| |||||| |||  |||| | ||||| || ||||| || ||||||||   |||  |||| || ||| |||||||||| ||||    
T  11553236 tgtgatgcctttcatgctactcgagacgactattctaagtttggctgtattatttcttcatgtcgcagtctagttagctcttttttttaccaactctagg 11553335  T
Q  117 gtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatt 216  Q
    |||||||||  | ||| |||||| || ||||||| ||||||||| ||||||||| |||| |||||||||||||||    |||||||||| |||||| | |    
T  11553336 gtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttattttcatatacccgaat 11553435  T
Q  217 atattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||| || ||||||||||||||||  |||||||||||||    
T  11553436 atattgaaactcttattattaatgaaatactataagcatattt 11553478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 254
Target Start/End: Original strand, 2058643 - 2058854
Alignment:
Q  43 atgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaa 142  Q
    ||||||| ||||||||||| | |||||| ||||| ||||| |  || ||||| ||||||||| | |||| || ||||||||||||||||| |||| | ||    
T  2058643 atgacacatctgaatttggttccattatttcatcttgtcgtttactatttagctctttcttttcgaactctaaggtggagtttgttaggcgacaaaccaa 2058742  T
Q  143 cgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaa 242  Q
    |  |||| |||||| ||||||| ||||| | |||||| |||||| ||||| |||||||| | | |||||||||| ||||||| || ||||||| ||| ||    
T  2058743 cacggttactcatgctcttgcaagagaaactacgttattagctaatcccgctgtttattatgatatacccaattgtattgaaactcttattatcaattaa 2058842  T
Q  243 atgttataagca 254  Q
    ||||||||||||    
T  2058843 atgttataagca 2058854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 33650871 - 33651028
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| ||| ||| ||||||  |||||||||||||| | ||||| |||||| ||||||| ||||  |||||| ||||||||||||||||||||||    
T  33650871 tttaccaactctagagtgaagtttgccaggcaacaagcaaatgcggttgttcatgtgcttgcagaagaagtcacgtttctagctagtcccgttgtttatt 33650970  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    || |||||||||||  |||||||  | ||||||||||||||||| | ||| |||||||    
T  33650971 ttaacatacccaatcgtattgaatatcttattattaatgaaatgctctaaacatattt 33651028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 106 - 255
Target Start/End: Original strand, 23379867 - 23380015
Alignment:
Q  106 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 205  Q
    |||||| ||||||||||||| |||||  ||| || |||||||||| | ||| ||| ||| |||||  ||| |||||||||||| ||| |||||||||| |    
T  23379867 ccaactctagggtggagtttattaggtgaca-gccaacgaggttgtttatgctctcgcaagagaagtcacattactagctagttccgctgtttattttaa 23379965  T
Q  206 catacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
     |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  23379966 aatacccaattgtattgaaactattattattaatgaaatgttataagcat 23380015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 27268094 - 27267907
Alignment:
Q  43 atgacacttctgaatttggat-gcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaa 141  Q
    ||||||| || |||||||| | ||||||| || || ||||  ||| |||||| |||||| ||| | |||| |||||||||||||||||||  |||||| |    
T  27268094 atgacacgtccgaatttggtttgcattatttcttcttgtcattctttgtttatttctttattttctaactctagggtggagtttgttaggtgacaagcta 27267995  T
Q  142 acgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctat 229  Q
    ||||||||||||||   |||||| ||||| |||||||||||| ||||||| ||||||||| | | |||||||||| ||||||| ||||    
T  27267994 acgaggttgctcatacacttgcaagagaagccacgttactagttagtcccattgtttattatgaaatacccaattgtattgaaactat 27267907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 20661198 - 20661339
Alignment:
Q  113 tagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccc 212  Q
    |||||||||||||||||||  |||||  |||  ||||||||||| ||||||| ||||  ||||||||||||||||||||| ||| |||| | ||||||||    
T  20661198 tagggtggagtttgttaggtgacaagttaacagggttgctcatgctcttgcaagagacaccacgttactagctagtcccgctgtctattatgacataccc 20661297  T
Q  213 aattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||| ||||||| || | ||||| ||||||||| ||||||||    
T  20661298 aattgtattgaatctttgattatcaatgaaatgctataagca 20661339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 14231017 - 14231156
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| ||| |||||||||||||||| |||||| || | ||| |||||   ||||||| | ||| |||| || || |||||||||||| | ||||    
T  14231017 tttaccaactctagagtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgttatctatt 14231116  T
Q  202 ttcacatacccaattatattgaacctattattattaatga 241  Q
    |||| |||||||||| ||||||| || | |||||||||||    
T  14231117 ttcatatacccaattgtattgaaactttgattattaatga 14231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 23761507 - 23761368
Alignment:
Q  116 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 215  Q
    ||||||||||||||||| ||||||||||| | ||||||||| ||||||| ||||  ||  ||||||  |||||||||  ||||||| | | |||||| ||    
T  23761507 ggtggagtttgttaggcgacaagcaaacgggattgctcatgctcttgcaagagataccttgttactcactagtcccgccgtttattatgatatacccgat 23761408  T
Q  216 tatattgaacctattattattaatgaaatgttataagcat 255  Q
    | ||||||| || | ||||| ||||||||| |||||||||    
T  23761407 tgtattgaaactctgattatcaatgaaatgctataagcat 23761368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 23789651 - 23789512
Alignment:
Q  116 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 215  Q
    ||||||||||||||||| ||||||||||| | ||||||||| ||||||| ||||  ||  ||||||  |||||||||  ||||||| | | |||||| ||    
T  23789651 ggtggagtttgttaggcgacaagcaaacgggattgctcatgctcttgcaagagataccttgttactcactagtcccgccgtttattatgatatacccgat 23789552  T
Q  216 tatattgaacctattattattaatgaaatgttataagcat 255  Q
    | ||||||| || | ||||| ||||||||| |||||||||    
T  23789551 tgtattgaaactctgattatcaatgaaatgctataagcat 23789512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 44886232 - 44886378
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    ||||| || |||||||| |  ||||| ||||| ||||| |  || ||||||||||||||| | |||| |||||||||||||||||||| |||||  ||||    
T  44886232 gacacatccgaatttggctctattatttcatcttgtcgtttgctttttagttctttcttttctaactctagggtggagtttgttaggcgacaagtcaacg 44886331  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtccc 191  Q
     |||||||||||  |||||| ||||| |||||||  |||||| ||||    
T  44886332 cggttgctcatgcacttgcaagagaagccacgttcttagctaatccc 44886378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 11502322 - 11502391
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgt 177  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||  ||||||| ||||| ||||||    
T  11502322 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgt 11502391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 23762640 - 23762505
Alignment:
Q  116 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 215  Q
    ||||||||||||||||| |||||| |||| | |||||| || ||||||| |||   ||  |||||| ||||||||||  ||||||| | | |||||| ||    
T  23762640 ggtggagtttgttaggcgacaagctaacgggattgctcgtgctcttgcaagagtggccttgttacttgctagtcccgccgtttattataatatacccgat 23762541  T
Q  216 tatattgaacctattattattaatgaaatgttataa 251  Q
    | ||||||| || | ||||| ||||||||| |||||    
T  23762540 tgtattgaaactctgattatcaatgaaatgctataa 23762505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 26501305 - 26501264
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  26501305 tattgaacctattattataaatgaaatgctataaacatattt 26501264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 30848315 - 30848352
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  30848315 tattgaatctattattattaatgaaatgctataagcat 30848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 41655449 - 41655380
Alignment:
Q  134 acaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatttt 203  Q
    ||||| ||| ||||||| ||| |  |||||||||||| |||| ||| |||||||||||||| ||||||||    
T  41655449 acaagaaaatgaggttggtcacgcacttgcaggagaagccacattattagctagtcccgttatttatttt 41655380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 7896028 - 7895972
Alignment:
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagcatatttgcttt 264  Q
    ||||| ||| ||||||  || |||||| |||||||||||||||||||||||| ||||    
T  7896028 tacccgattgtattgactctgttattactaatgaaatgttataagcatattttcttt 7895972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 2246951 - 2246710
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  2246951 tgtgatgcctcccatgctaatcgagatgacacttctgaatttgggtgcattatctcatcatgtcggtctctgtttaattctttctttaccaactctaggg 2246852  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||  ||||||||||||||||||||  |||     
T  2246851 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaagtcatgttactagctagtcatgttgtttattttcacatacctgattg 2246752  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  2246751 tattgaacctcttattattaatgaaatgctataagcatattt 2246710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 953639 - 953817
Alignment:
Q  77 atgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacg 176  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||  || ||||||||||||| |||||||||||||||||||||||  ||||    
T  953639 atgtcggtctctgtttagttctttctttattaattttagggtggagtttgtttagcgacaagcaaacgagtttgctcatgttcttgcaggagaagtcacg 953738  T
Q  177 ttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||| ||||| ||| |||||    
T  953739 ttactagctagtcccgttgtttattttcacatatctaattgtattgaacctcttattattaataaaatgctatgagcat 953817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 26932091 - 26931848
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    ||||||||||||||| ||| | || | |||   ||||||||||| |||||||| || || |||||  ||||  ||||||||||||||||||||| |||||    
T  26932091 tgtgatgccttccatactacttgatacgactgctctgaatttgggtgcattatttcttcctgtcgtactctagttagttctttctttaccaactctaggg 26931992  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    | |||||||||||||||||||| || || |||| ||||||||||||||||||| |||| ||||||||||||| ||   |||||||||| ||| || | |     
T  26931991 tagagtttgttaggcaacaagccaatgaagttgttcatgttcttgcaggagaagccacattactagctagtctcgccatttattttcatatatccgaatg 26931892  T
Q  218 tattgaacctattat--tattaatgaaatgttataagcatattt 259  Q
    ||||||| || ||||  ||||||||||||| |||||||||||||    
T  26931891 tattgaatctcttattatattaatgaaatgatataagcatattt 26931848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 14505667 - 14505868
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || || ||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||    
T  14505667 gaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 14505766  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| | ||  ||||||   ||||||||||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||    
T  14505767 atgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagc 14505866  T
Q  254 at 255  Q
    ||    
T  14505867 at 14505868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 15990604 - 15990403
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || || ||||| ||| |||| | | |||||||| | |||| |||||||||||||||||||| ||||||  ||| ||||||||    
T  15990604 gaatttggatgcattatttcctcctgtcgttctttgttcattactttcttttctaactctagggtggagtttgttaggcgacaagcctacgtggttgctc 15990505  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| | ||  ||||||   ||||||||||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||    
T  15990504 atgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagc 15990405  T
Q  254 at 255  Q
    ||    
T  15990404 at 15990403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 55 - 255
Target Start/End: Complemental strand, 37590230 - 37590030
Alignment:
Q  55 aatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctca 154  Q
    |||||||||||||| | || ||  |||| ||| |||| |||  ||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||    
T  37590230 aatttggatgcattgtttcctcccgtcgttctttgttcagtattttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctca 37590131  T
Q  155 tgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    || ||||||| | ||  ||||||   |||||||| |||  ||||||||| | |||||||||| ||||||| || ||||||||||||||||| ||||||||    
T  37590130 tgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaatatacccaattgtattgaaactcttattattaatgaaatgctataagca 37590031  T
Q  255 t 255  Q
    |    
T  37590030 t 37590030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 14657846 - 14657699
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| ||| ||||  |||||| ||||||| ||||| ||||||||||||| |||| | ||||||||||| | |    
T  14657846 aactctagggtggagtttgttaggcgacaagccaacaaggtatctcatgctcttgcaagagaagccacgttactagccagtcacattgtttattttgata 14657747  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||| |||| ||||||| || |||| || ||||||||| |||||||||    
T  14657746 tacctaattgtattgaaactcttataatcaatgaaatgctataagcat 14657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 27978753 - 27978888
Alignment:
Q  116 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 215  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||| | ||||||| | | |||||||||    
T  27978753 ggtggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaat 27978852  T
Q  216 tatattgaacctattattattaatgaaatgttataa 251  Q
    | ||||||| ||||||| ||||||||||||||||||    
T  27978853 tttattgaaactattatgattaatgaaatgttataa 27978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 28036022 - 28036157
Alignment:
Q  116 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 215  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||| | ||||||| | | |||||||||    
T  28036022 ggtggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatgatatacccaat 28036121  T
Q  216 tatattgaacctattattattaatgaaatgttataa 251  Q
    | ||||||| ||||||| ||||||||||||||||||    
T  28036122 tttattgaaactattatgattaatgaaatgttataa 28036157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 255
Target Start/End: Complemental strand, 17837304 - 17837147
Alignment:
Q  98 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 197  Q
    ||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||  ||||||| ||||| ||||||   |||||||||| |  |||    
T  17837304 tttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatactcttgcaagagaagccacgtctttagctagtcctgccgtt 17837205  T
Q  198 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||  | |||||| ||||||||||| || | ||||||||||||||| |||||||||    
T  17837204 tatttcgatatacccgattatattgaatctttaattattaatgaaatgctataagcat 17837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 255
Target Start/End: Complemental strand, 34723987 - 34723846
Alignment:
Q  114 agggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccca 213  Q
    ||||||||||||||||||| |||||| |||| ||||||||||  ||||||| ||||| ||||||   ||||||||| ||  ||||||| | | |||||||    
T  34723987 agggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgatataccca 34723888  T
Q  214 attatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||| ||||||| ||||||| |||||||||||| | |||||||    
T  34723887 attgtattgaatctattatgattaatgaaatgctctaagcat 34723846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 255
Target Start/End: Original strand, 35285032 - 35285181
Alignment:
Q  106 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 205  Q
    |||||| |||||||||||||||||||| |||||| |||| ||| ||||||  ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  35285032 ccaactctagggtggagtttgttaggcgacaagctaacgcggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatga 35285131  T
Q  206 catacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  35285132 tatacccaattgtattgaggctattatgatcaatgaaatgctataagcat 35285181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 10601088 - 10601240
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| |  ||||||||||||| ||| |||||| || | ||| |||||   ||| ||||| ||| |||| || || |||||||||  | |||||     
T  10601088 tttaccaactctcaggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccactatttatc 10601187  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||| |||||||||||||||||| || | |||| |||||||||| ||||||||    
T  10601188 ttcatatacccaattatattgaaactttgattactaatgaaatgctataagca 10601240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 1186545 - 1186682
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||   |||   |||||   |||||| ||   | ||||||||| | |    
T  1186545 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgctaaagagatcacgtctttagctaatcgaatcgtttattttaata 1186644  T
Q  208 tacccaattatattgaacctattattattaatgaaatg 245  Q
    ||  ||||||||||||| || |||||||||||||||||    
T  1186645 tattcaattatattgaaacttttattattaatgaaatg 1186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 4518359 - 4518468
Alignment:
Q  113 tagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccc 212  Q
    |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | | ||| ||    
T  4518359 tagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagagaccacgtctttagctagtcccgctgtctattatgatatatcc 4518458  T
Q  213 aattatattg 222  Q
    |||| |||||    
T  4518459 aattgtattg 4518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 245
Target Start/End: Complemental strand, 19299172 - 19299024
Alignment:
Q  97 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 196  Q
    |||||||| | |||| ||||||| ||||||||| || | |||| ||||  |||| ||||| |||| || ||||   |||||   ||||||||||||  ||    
T  19299172 ctttcttttctaactctagggtgaagtttgttaagcgataagccaacgtagttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgt 19299073  T
Q  197 ttattttcacatacccaattatattgaacctattattattaatgaaatg 245  Q
    ||||||| | |||||||||| |||||||  | |||||||||||||||||    
T  19299072 ttattttgatatacccaattgtattgaaatttttattattaatgaaatg 19299024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 42080471 - 42080595
Alignment:
Q  115 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaa 214  Q
    |||||||||||| ||||  ||||||||| | | ||||||||  ||||||||||||  |||| ||  |||| | |||||||||||||||||| | ||| ||    
T  42080471 gggtggagtttgctaggagacaagcaaatgtgattgctcatactcttgcaggagagaccacatttgtagccaatcccgttgtttattttcatacaccaaa 42080570  T
Q  215 ttatattgaacctattattattaat 239  Q
    |||||||| | || | |||||||||    
T  42080571 ttatattggaactttgattattaat 42080595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 23558678 - 23558798
Alignment:
Q  134 acaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattatt 233  Q
    ||||||||| | ||||| ||||  ||||||||||||    || || ||||||||||||  | ||||||||||||||||| | | ||||||  || | |||    
T  23558678 acaagcaaatgtggttgttcatactcttgcaggagagataacatttctagctagtcccactatttattttcacataccccaatgtattgagactttgatt 23558777  T
Q  234 attaatgaaatgttataagca 254  Q
     ||||||||||||||||||||    
T  23558778 gttaatgaaatgttataagca 23558798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 7670273 - 7670232
Alignment:
Q  214 attatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||||||| |||||||||||||||||||| |||| ||||    
T  7670273 attatattgaatctattattattaatgaaatgatatacgcat 7670232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 13700166 - 13700129
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  13700166 tattgaaactattattattaatgaaatgctataagcat 13700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 22897971 - 22898008
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  22897971 tattgaaactattattattaatgaaatgctataagcat 22898008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 19382665 - 19382633
Alignment:
Q  227 tattattattaatgaaatgttataagcatattt 259  Q
    ||||||||||||||||||| |||||||||||||    
T  19382665 tattattattaatgaaatgctataagcatattt 19382633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 23509080 - 23508839
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| | |||||    
T  23509080 tgtgatgccttccatgctaatcgagatgacacttctgaatttaggtgcattatctcatcatgtcggtctctatttagttctttctttaccaattctaggg 23508981  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||  |||     
T  23508980 tggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgagctagtcccgttgtttaatttcacatacctgattg 23508881  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||||| |||||||||||||||||  ||||||||||||    
T  23508880 tattgaacctcttattattaatgaaatgcaataagcatattt 23508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 16416513 - 16416741
Alignment:
Q  20 tgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtg 119  Q
    ||||| ||| |||| ||||||||| ||||| | ||||||| ||| |||||||||||||||| ||||||| || | ||||||||||||||||| |||||||    
T  16416513 tgatgtcttgcatgttaatcgagacgacacatttgaatttcgatacattatctcatcatgttggtctctattcaattctttctttaccaactctagggtg 16416612  T
Q  120 gagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattata 219  Q
     |||||||||||| ||||| ||| |||||||||| | |||||||||||||   ||| ||||||||||||| | || |||||||||| |||||||||| ||    
T  16416613 tagtttgttaggcgacaagtaaatgaggttgctcgtattcttgcaggagatgtcacattactagctagtctcattatttattttcatatacccaattgta 16416712  T
Q  220 ttgaacctattattattaatgaaatgtta 248  Q
    |||||||| ||||||||||||||||||||    
T  16416713 ttgaacctcttattattaatgaaatgtta 16416741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 34355938 - 34355737
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    |||||||| |||||||| || || ||||| ||| |||||| |||||| |||   |||| ||||||| ||||||||| || | |||| |||||||||||||    
T  34355938 gaatttggttgcattatttcttcttgtcgttctttgtttacttctttattttttaactctagggtgaagtttgttatgcgaaaagccaacgaggttgctc 34355839  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| ||||| ||| ||||||||||||||||| |||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||    
T  34355838 atgctcttgcaagagaaaccatgttactagctagtcccgctgtttattttgatatacccaattgtattgaaactcttattatcaatgaaatgctataagc 34355739  T
Q  254 at 255  Q
    ||    
T  34355738 at 34355737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 1493382 - 1493235
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||||  | |    
T  1493382 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcaagagaggccacgtctttagctagtcccgccgtttatttcgata 1493283  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  1493282 tacccaattatattgaaactattattatcaatgaaatgctataagcat 1493235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 9959227 - 9959378
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| |||||| |||||   ||||||||||||  ||||||| | | |    
T  9959227 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaactcacgtctttagctagtcccgccgtttattatgata 9959326  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    ||||||||| ||||||  ||||||| |||||||||||| |||||||| ||||    
T  9959327 tacccaattgtattgagactattatgattaatgaaatgctataagcacattt 9959378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 187079 - 187172
Alignment:
Q  152 tcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatg 245  Q
    ||||||||||||||||||| |||| || ||||||||||  ||| |||||||| ||||| |||||| ||||||| || |||||||||||||||||    
T  187079 tcatgttcttgcaggagaagccacatttctagctagtcttgttatttattttaacatatccaattgtattgaatctcttattattaatgaaatg 187172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 255
Target Start/End: Original strand, 31029126 - 31029275
Alignment:
Q  106 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 205  Q
    |||||| |||||||||||||||||||| |||||| |||  ||| ||||||  ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  31029126 ccaactctagggtggagtttgttaggcgacaagctaacacggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatga 31029225  T
Q  206 catacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  31029226 tatacccaattgtattgagactattatgatcaatgaaatgctataagcat 31029275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 254
Target Start/End: Complemental strand, 30141084 - 30140932
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| |||||||||||||||||||| |||||| || | ||| | |||   |||||||   ||| |||| || || |||||||||| | | ||||    
T  30141084 tttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggatcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatt 30140985  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||| |||||||||| ||||||| || | ||||||||||||||| ||||||||    
T  30140984 ttcatatacccaattgtattgaaactttgattattaatgaaatgctataagca 30140932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 13768183 - 13768304
Alignment:
Q  138 gcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattatta 237  Q
    ||||||| |||||  ||| |||||||| |||||  ||||||||||| ||||   |||||||||||| | |||||| ||| ||||||| || |||||||||    
T  13768183 gcaaacggggttgtccatattcttgcaagagaagtcacgttactagttagttttgttgtttatttttatatacccgattgtattgaatctcttattatta 13768282  T
Q  238 atgaaatgttataagcatattt 259  Q
    || ||||| |||||||||||||    
T  13768283 atcaaatgctataagcatattt 13768304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 13825454 - 13825534
Alignment:
Q  90 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaa 170  Q
    |||| |||||||||| | |||||||| |||||||||||||||| |||||| |||| |||||||||||| |||||| |||||    
T  13825454 tttacttctttcttttctaactttagtgtggagtttgttaggcgacaagccaacgcggttgctcatgtacttgcaagagaa 13825534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 10910512 - 10910623
Alignment:
Q  90 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 189  Q
    |||||| |||||||| | ||||||||||||||||||||||||  |||| | |||  ||||||||||| ||||||| ||||| |||||||  ||| |||||    
T  10910512 tttagtcctttcttttctaactttagggtggagtttgttaggtgacaaactaacacggttgctcatgctcttgcaagagaaaccacgttcttagttagtc 10910611  T
Q  190 ccgttgtttatt 201  Q
    ||| | ||||||    
T  10910612 ccgctatttatt 10910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 255
Target Start/End: Original strand, 16890210 - 16890357
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| ||||   |||| ||||||||||| ||||||| ||||| |||| |   || ||||| |||  ||||||||| | |    
T  16890210 aactctagggtggagtttgttaggcgacaaagcaacgcggttgctcatgctcttgcaagagaagccacatctttaactagtaccgccgtttattttgata 16890309  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||||| | ||||| || || ||||||||||||||  ||||||||    
T  16890310 tacccaattgttttgaaactcttgttattaatgaaatgcaataagcat 16890357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 30588912 - 30589068
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    ||||| || |||||||| |  ||||||||||| ||||| |  || ||||||||||||||| | |||| |||||||||||||||    | ||| || |||     
T  30588912 gacacatccgaatttggctctattatctcatcttgtcgtttactttttagttctttcttttctaactctagggtggagtttgtcctacgacatgccaaca 30589011  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
     ||||||||||| ||||||| ||||| |||||||  |||||||| ||||| ||||||    
T  30589012 cggttgctcatgctcttgcaagagaagccacgttcttagctagttccgttatttatt 30589068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 35087882 - 35087841
Alignment:
Q  213 aattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  35087882 aattgtattgaaacgattattattaatgaaatgttataagca 35087841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 6695689 - 6695725
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagca 254  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6695689 tattgaaactattatcattaatgaaatgttataagca 6695725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 13685918 - 13686159
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    |||||||| ||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||| |||||    
T  13685918 tgtgatgcattccatgctaatcaaggcgacacttctgaatttgggtgcattatctcatcatgtcggtctttgttcagttctttgtttaccaactctaggg 13686017  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||| |||||| |||     
T  13686018 tggagtttgttaggcgacaagcaaacggggttgctcatgttcttgcaagagaagtcacgttactagctagtcccattgtttattttcatatacccgattg 13686117  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  13686118 tattgaatctcttattattaatgaaatgctataagcatattt 13686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 50 - 259
Target Start/End: Complemental strand, 37061247 - 37061038
Alignment:
Q  50 ttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggtt 149  Q
    |||||||||||| |||||||| || || ||||  ||||| || || ||||  |||||||||| |||||||||||||| ||||  |||| |||| | ||||    
T  37061247 ttctgaatttgggtgcattatttcttcttgtcaatctcttttcagctcttcttttaccaactctagggtggagtttgctaggtgacaaacaaatgtggtt 37061148  T
Q  150 gctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttat 249  Q
    |||||||| |||||| ||||| ||| ||| |||||||||||||||||||||||| |||||||| ||| ||||||| || |||||||||| ||||||||||    
T  37061147 gctcatgtgcttgcaagagaagccatgtttctagctagtcccgttgtttattttaacatacccgattgtattgaatctcttattattaacgaaatgttat 37061048  T
Q  250 aagcatattt 259  Q
    ||||||||||    
T  37061047 aagcatattt 37061038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 30191141 - 30190940
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    |||||||| |||||||| |  || ||||| ||| |||| ||| ||| |||| | |||||||||||||||||||||||||||||||| |||| ||||||||    
T  30191141 gaatttggctgcattattttctcctgtcgttctttgttcagtacttccttttctaactttagggtggagtttgttaggcaacaagccaacgtggttgctc 30191042  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| |||| || ||||  ||||||   ||||||||||||  ||||||||| | ||| |||||| ||||||| || |||||||||||||||||||||||||    
T  30191041 atgctcttacaagagagaccacgtctttagctagtcccgccgtttattttgatatatccaattgtattgaaactcttattattaatgaaatgttataagc 30190942  T
Q  254 at 255  Q
    ||    
T  30190941 at 30190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 30859309 - 30859510
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || |||||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||    
T  30859309 gaatttggatgcattatttcctcatgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 30859408  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| | ||  ||||||   || |||||||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||    
T  30859409 atgctcttgcaagggaggccacgtctttaactagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagc 30859508  T
Q  254 at 255  Q
    ||    
T  30859509 at 30859510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 78 - 255
Target Start/End: Complemental strand, 16431525 - 16431348
Alignment:
Q  78 tgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgt 177  Q
    ||||| ||| |||||| || ||| ||| | |||| |||||||||||||||||||| |||| | |||||||||| ||||| ||||||| ||||| ||||||    
T  16431525 tgtcgttctttgtttacttttttattttctaactctagggtggagtttgttaggcgacaaaccaacgaggttgttcatgctcttgcaagagaagccacgt 16431426  T
Q  178 tactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||| || ||||| |||||||||| | |||| || || |||||||  | |||||||||||||||||||||||||||    
T  16431425 tactagttactcccgctgtttattttgaaatactcagttgtattgaaattcttattattaatgaaatgttataagcat 16431348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 55227558 - 55227759
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || || ||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||| | |||| ||||||||    
T  55227558 gaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaaaccaacgtggttgctc 55227657  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| | ||  |||| |   ||||||||||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||    
T  55227658 atgctcttgcaagggaggccacatctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagc 55227757  T
Q  254 at 255  Q
    ||    
T  55227758 at 55227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 16582541 - 16582335
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    ||||| || |||||||| || ||||| || || ||||| | | |||||| |  ||| ||| ||||||||||||||||||||||  ||| |||||| ||||    
T  16582541 gacacatccgaatttggctgtattatttcttcttgtcgttatttgtttactgttttattttccaactttagggtggagtttgtcgggcgacaagccaacg 16582442  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
    ||| |||||||| ||||||| |||||  |||||||||||||||||||   ||||||||| | ||||||| || ||||||| |||||||||||||||| ||    
T  16582441 aggctgctcatgctcttgcaagagaagtcacgttactagctagtcccaccgtttattttgaaatacccagttgtattgaaactattattattaatgatat 16582342  T
Q  245 gttataa 251  Q
    | |||||    
T  16582341 gctataa 16582335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 54027848 - 54027691
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| ||||||||||||| |||||| |||||| || | ||| |||||   ||||| ||| ||| |||| || || |||| ||||| | ||||||    
T  54027848 tttaccaactctagggtggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttatt 54027749  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||| |||||||||||||||||| || | ||||||||||||||| |||||||| ||||    
T  54027748 ttcatatacccaattatattgaaactttgattattaatgaaatgatataagcacattt 54027691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 254
Target Start/End: Original strand, 18878117 - 18878320
Alignment:
Q  51 tctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttg 150  Q
    ||||||||| | |||||||| || |||||||| ||| ||||| |   ||| ||| | |||| |||||||||||||||||||| |||||  || |  ||||    
T  18878117 tctgaattttgttgcattatttcctcatgtcgttctttgttttgcaatttattttctaactctagggtggagtttgttaggcgacaagtcaatgcagttg 18878216  T
Q  151 ctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttata 250  Q
    |||||| | ||||| ||||  |||||||  |||||| || ||| ||||||| | | ||||||| || ||||||| |||||||||||||||||||| ||||    
T  18878217 ctcatgcttttgcacgagaggccacgtttttagctaatctcgtcgtttattatgatatacccacttgtattgaaactattattattaatgaaatgctata 18878316  T
Q  251 agca 254  Q
    ||||    
T  18878317 agca 18878320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 20527919 - 20527775
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| ||||||||||||||||||||  ||||| |||| ||||||||||| ||||||| ||||  ||  |||||| ||||||||||   |||||| | | |    
T  20527919 aactctagggtggagtttgttaggcggcaagctaacggggttgctcatgctcttgcaagagaggccttgttactcgctagtcccgccatttattatgata 20527820  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataag 252  Q
    ||||| ||| ||||||| || ||||||| ||||||||| ||||||    
T  20527819 tacccgattgtattgaaactcttattatcaatgaaatgctataag 20527775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 4235313 - 4235464
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| |||| | | ||||||| ||||||| ||||  ||||||   |||||||| | |  ||||||| | | |    
T  4235313 aactctagggtggagtttgttaggccacaagccaacgcgatggctcatgctcttgcacgagaggccacgtctttagctagttctgccgtttattatgata 4235412  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    || |||||| ||||||  ||||||| |||||||||||| |||||||||||||    
T  4235413 tatccaattgtattgagactattatgattaatgaaatgctataagcatattt 4235464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 27087593 - 27087436
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| |||||||||||||||||||| |||||| || | ||| | |||   |||||||   ||| |||| || || |||||||||| | | ||||    
T  27087593 tttaccaactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatt 27087494  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||| |||| ||||| ||||||| || | ||||||||||||||| |||||||| ||||    
T  27087493 ttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacattt 27087436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 27066492 - 27066335
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| |||||||||||||||| ||| |||||| || | ||| | |||   |||||||   ||| |||| || || |||||||||| | | ||||    
T  27066492 tttaccaactctagggtggagtttgttgggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctatt 27066393  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||| |||| ||||| ||||||| || | ||||||||||||||| |||||||| ||||    
T  27066392 ttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacattt 27066335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 12355218 - 12355370
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| |||||||||||||||||||| |||||  || | ||| |||||   |||| ||   ||| |||| || || |||||||||  | | ||||    
T  12355218 tttaccaactctagggtggagtttgttaggcgacaaggtaatgtggtggctcacactcttccaaaggaaaccacatttctcgctagtcccactatctatt 12355317  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||| |||||||||| ||||||| || | ||||||||||||||| | ||||||    
T  12355318 ttcatatacccaattgtattgaaactttgattattaatgaaatgctttaagca 12355370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 34301807 - 34301955
Alignment:
Q  106 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 205  Q
    |||||| | |||||||||| ||||||| |||| |||| | ||| ||||||  |||||||  |||  |||| ||| ||||||||||||||  ||||| |      
T  34301807 ccaactctcgggtggagttcgttaggcgacaaacaaatgcggtagctcataatcttgcaaaagaggccacattaatagctagtcccgttacttattatgc 34301906  T
Q  206 catacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
     |||||||||| ||||||| || | || |||||||||||| ||||||||    
T  34301907 tatacccaattgtattgaatctttaatcattaatgaaatgctataagca 34301955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 54823658 - 54823806
Alignment:
Q  97 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 196  Q
    |||||||| | |||| ||||||| ||||||||| || | |||| ||||  |||| ||||| |||| || ||||   |||||   ||||||||||||  ||    
T  54823658 ctttcttttctaactctagggtgaagtttgttaagcgataagccaacgtagttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgt 54823757  T
Q  197 ttattttcacatacccaattatattgaacctattattattaatgaaatg 245  Q
    ||||||| | |||||||||| |||||||  | |||||||||||||||||    
T  54823758 ttattttgatatacccaattgtattgaaatttttattattaatgaaatg 54823806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 4462486 - 4462723
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    ||||||||||| ||||||| ||||||| |   |||||| ||||| || ||||| |  ||||||||  ||||  |||| ||||| |||||||||| |   |    
T  4462486 tgtgatgcctttcatgctactcgagattattattctgagtttgggtgtattatttattcatgtcgcactctagttagctctttttttaccaactctgaag 4462585  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    |||||||| || ||| ||||   ||   ||||||||||||| | ||||||||| |||| |||||| ||||||||    |||||||||| ||| |  | |     
T  4462586 tggagtttattcggcgacaaattaa---ggttgctcatgtt-tcgcaggagaagccacattactaactagtcccacaatttattttcatatatctgaatg 4462681  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    ||||||| || ||||||||||| ||||||||||| |||||||    
T  4462682 tattgaaacttttattattaataaaatgttataaacatattt 4462723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 14263982 - 14264087
Alignment:
Q  51 tctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttg 150  Q
    ||||| ||||| |||||||| || |||||||| ||| ||||| ||   || ||| ||||||  ||||| ||||||||||||| |||||| |||| |||||    
T  14263982 tctgagtttgggtgcattatttcttcatgtcgttctttgtttcgtaactttttttccaactccagggtagagtttgttaggcgacaagccaacgcggttg 14264081  T
Q  151 ctcatg 156  Q
    ||||||    
T  14264082 ctcatg 14264087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 26949203 - 26949363
Alignment:
Q  84 tctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactag 183  Q
    ||||| |||| | |||||||||| |||| |||||||||||||  || || ||||||||| | ||  |||||||  |||||||||||  | || || ||||    
T  26949203 tctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctag 26949302  T
Q  184 ctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatg 245  Q
    ||||||| |||  ||||||||   | ||   || |||||||||||||||||| |||||||||    
T  26949303 ctagtcctgttacttattttc-gttcccttcttgtattgaacctattattataaatgaaatg 26949363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 27066686 - 27066649
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagc 139  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  27066686 tttaccaactctagggtggagtttgttaggcgacaagc 27066649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 27066880 - 27066843
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagc 139  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  27066880 tttaccaactctagggtggagtttgttaggcgacaagc 27066843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 11790857 - 11790897
Alignment:
Q  215 ttatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  11790857 ttatattgaacagattattattaatgaaatgtaataagcat 11790897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 33611263 - 33611022
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    |||||||| ||||||||||||||||| ||||||| ||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  33611263 tgtgatgcattccatgctaatcgagacgacacttatgaattttggtgcattacctcatcatgtcggtctctgttcagttctttctttaccaactctaggg 33611164  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    ||||||||||||||| ||||||||||  ||||| ||||||||||||||||||  ||| |||||||||| ||||||||||||||||||| |||||| |||     
T  33611163 tggagtttgttaggcgacaagcaaacagggttgttcatgttcttgcaggagatgccatgttactagctggtcccgttgtttattttcatatacccgattg 33611064  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||||||| ||||||||||| ||||| |||||||||||||    
T  33611063 tattgaacctcttattattaataaaatgctataagcatattt 33611022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 48100943 - 48100729
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    |||| |||||||||||||||| |||| || || ||||| ||||| || || ||||| |||||||||| |||||||||||||| ||||| ||||||||| |    
T  48100943 gacatttctgaatttggatgcgttatttcttcttgtcgatctctattcagctctttttttaccaactctagggtggagtttgctaggcgacaagcaaatg 48100844  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
     |||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||||   ||| |  ||| |||||||  | ||||||||||||||||    
T  48100843 tggttgctcatgtgcttgcaggagaatccacgtttctagttagtcccgttgtttattttagtatatctgattgtattgaatatcttattattaatgaaat 48100744  T
Q  245 gttataagcatattt 259  Q
    | |||||||||||||    
T  48100743 gctataagcatattt 48100729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 97 - 255
Target Start/End: Complemental strand, 13015114 - 13014956
Alignment:
Q  97 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 196  Q
    |||| ||| |||||| | ||||| |||||||||||| |||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||    
T  13015114 ctttattttccaactctcgggtgtagtttgttaggcgacaagccaacgaggttgctcatgctcttgcaagagaatccacgttactagctagtcctgttgt 13015015  T
Q  197 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  13015014 ttattttgagatacccaattgtattgaaactattattatcaatgaaatgctataagcat 13014956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 15633166 - 15633376
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    ||||| || |||||||| |||||||| || || ||||| ||  |||| | | |||| ||| |||||| | |||||||||||||||||| |||||| || |    
T  15633166 gacacgtccgaatttggctgcattatttcttcttgtcgttcgttgttcactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatg 15633265  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
    |||||||||||  ||||||| ||||| |||||||||||||||||||||||||||| ||| | |||||||||| ||||||| |||||||||| ||||||||    
T  15633266 aggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttgaaatacccaattgtattgaaactattattatcaatgaaat 15633365  T
Q  245 gttataagcat 255  Q
    | |||||||||    
T  15633366 gctataagcat 15633376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 48770036 - 48770263
Alignment:
Q  32 tgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttagg 131  Q
    ||||| |||||| |||  |||||| |||||||| ||||| || ||||||||  ||||  |||| ||||| |||||||||| ||||||||||||| || ||    
T  48770036 tgctactcgagacgactattctgagtttggatgtattatttcttcatgtcgcactctagttagctctttttttaccaactctagggtggagtttattcgg 48770135  T
Q  132 caacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctatta 231  Q
    | | |||| || ||||||||||||||||| ||||||||| |||| |||| ||||||||||    |||||||||| |||||| | | ||||||| || |||    
T  48770136 cgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcccaccatttattttcatatacccgaatgtattgaaactctta 48770235  T
Q  232 ttattaatgaaatgttataagcatattt 259  Q
    |||||||||||||| |||||||||||||    
T  48770236 ttattaatgaaatgctataagcatattt 48770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 255
Target Start/End: Original strand, 32480162 - 32480362
Alignment:
Q  55 aatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctca 154  Q
    |||||||||||||||| || || ||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||    
T  32480162 aatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctca 32480261  T
Q  155 tgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |  ||||||| | ||  ||||||   ||||||||||||  ||||||||| | |||| ||||| ||||||| || ||||||||||||||||| ||||||||    
T  32480262 tactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaatatactcaattgtattgaaactcttattattaatgaaatgctataagca 32480361  T
Q  255 t 255  Q
    |    
T  32480362 t 32480362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 3896475 - 3896612
Alignment:
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    ||||||||||||||| |||||| |||| |||||||||||  |||||| ||||  ||||||   ||||||||||||  ||||||||| | |||||| |||     
T  3896475 tggagtttgttaggcgacaagccaacgtggttgctcatgcacttgcaagagaggccacgtctttagctagtcccgccgtttattttgatatacccgattg 3896574  T
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| || ||||||||||||||||| |||||||||    
T  3896575 tattgaaactcttattattaatgaaatgctataagcat 3896612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 255
Target Start/End: Complemental strand, 47081794 - 47081645
Alignment:
Q  106 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 205  Q
    |||||| |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  47081794 ccaactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatga 47081695  T
Q  206 catacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  47081694 tatacccaattgtattgagactattatgatcaatgaaatgctataagcat 47081645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 8118940 - 8118792
Alignment:
Q  107 caactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcac 206  Q
    ||||| |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | |     
T  8118940 caactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgat 8118841  T
Q  207 atacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  8118840 atacccaattgtattgagactattatgatcaatgaaatgctataagcat 8118792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 259
Target Start/End: Original strand, 11343028 - 11343243
Alignment:
Q  43 atgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaa 142  Q
    ||||||| || |||||||| |||||||| || || ||| | ||| | |||||||||   ||| |||||| || | ||||||||||||||| ||||  |||    
T  11343028 atgacacgtccgaatttggttgcattat-tcttcttgttgttctttatttagttctactttttccaactctatgatggagtttgttaggcgacaaataaa 11343126  T
Q  143 cgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaa 242  Q
    ||  ||||||||||  |||||| ||| | ||||||| || |||||||||| |||||||||||| |||||| | ||||||||| |  ||||||| ||||||    
T  11343127 cggagttgctcatgcccttgcaagagtagccacgttgctcgctagtcccgctgtttattttcatataccctaatatattgaaacacttattatcaatgaa 11343226  T
Q  243 atgttataagcatattt 259  Q
    ||| ||||| |||||||    
T  11343227 atgctataaacatattt 11343243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 24226342 - 24226203
Alignment:
Q  113 tagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacataccc 212  Q
    |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||| | | ||||||    
T  24226342 tagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgacgtttattatgatataccc 24226243  T
Q  213 aattatattgaacctattattattaatgaaatgttataag 252  Q
    | || |||| || || ||||||||||||||||| ||||||    
T  24226242 acttgtatttaaactcttattattaatgaaatgctataag 24226203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 30502496 - 30502653
Alignment:
Q  98 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 197  Q
    ||||||| | |||| || ||||||||||||||  | |||||  |||| ||||||||||  ||||||| ||||  ||||||   ||||||||||||  |||    
T  30502496 tttcttttctaactctaaggtggagtttgttactcgacaagtcaacgcggttgctcatactcttgcaagagaggccacgtccttagctagtcccgcagtt 30502595  T
Q  198 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||| | |||||| ||| ||||||| || |||||||||||||||||||||||||||    
T  30502596 tattttgatatacccgattgtattgaaactcttattattaatgaaatgttataagcat 30502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 17238831 - 17238666
Alignment:
Q  90 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 189  Q
    ||||||||||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||||  |||||| ||||| |||| ||  || ||||||    
T  17238831 tttagttctttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacattcttaactagtc 17238732  T
Q  190 ccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||  | |||||| | | |||||| | | ||||||| |  | ||||| ||||||||| |||||||||    
T  17238731 ccactatttattatgatatacccgaatgtattgaatccttaattatcaatgaaatgctataagcat 17238666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 254
Target Start/End: Original strand, 41601376 - 41601579
Alignment:
Q  51 tctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttg 150  Q
    ||||||||||| |  ||||| || || ||||| ||| ||||| ||  ||| ||| | |||| ||||||||||||||||||||  ||||| || | |||||    
T  41601376 tctgaatttggttctattatttcttcctgtcgttctttgtttcgtaatttattttctaactctagggtggagtttgttaggcggcaagccaaagcggttg 41601475  T
Q  151 ctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttata 250  Q
     ||||| ||||||| ||||  |||| |   |||||||||||| |||||||| | | |||||||||| ||||||| ||||||| || | ||||||| ||||    
T  41601476 ttcatgctcttgcacgagaggccacatctttagctagtcccgctgtttattatgatatacccaattgtattgaaactattatgatgagtgaaatgctata 41601575  T
Q  251 agca 254  Q
    ||||    
T  41601576 agca 41601579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 27458083 - 27458285
Alignment:
Q  53 tgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgct 152  Q
    ||||||||| |  ||||| ||||| ||||| || || |||| |||| | ||| | |||| ||||||||||||| |||||  |||||| ||||||||||||    
T  27458083 tgaatttggttctattatttcatcttgtcgttcgctatttaattctgttttttctaactctagggtggagtttattaggagacaagccaacgaggttgct 27458182  T
Q  153 catgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataag 252  Q
     | | ||||||  ||||  ||||||   |||||||  |||| ||||||| | |||||||||||| ||||||| | ||||||||||||||| || | ||||    
T  27458183 aacgctcttgctagagatgccacgtccttagctagctccgtagtttattatgacatacccaattgtattgaatccattattattaatgaattgctttaag 27458282  T
Q  253 cat 255  Q
    |||    
T  27458283 cat 27458285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 3205281 - 3205177
Alignment:
Q  98 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 197  Q
    ||||||| | ||||||| ||||||||||||||||| |||| | |||| ||||||||||| ||||||| ||||| ||||||   ||||||||||||  |||    
T  3205281 tttcttttctaactttatggtggagtttgttaggcgacaacccaacgtggttgctcatgctcttgcaagagaagccacgtctttagctagtcccgccgtt 3205182  T
Q  198 tattt 202  Q
    |||||    
T  3205181 tattt 3205177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 27810574 - 27810687
Alignment:
Q  146 ggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatg 245  Q
    |||||||||||  |||||||| ||  |||| || || ||||||| || |||||||||| | ||||||| || ||||||| |||||||||| ||||||||     
T  27810574 ggttgctcatgcacttgcaggggaggccacattccttgctagtctcgctgtttattttaatatacccagttgtattgaaactattattataaatgaaatt 27810673  T
Q  246 ttataagcatattt 259  Q
     |||||||||||||    
T  27810674 ctataagcatattt 27810687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 26016618 - 26016679
Alignment:
Q  198 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    |||||| | |||||||||| |||||||  | ||||||||||||||||| |||||||||||||    
T  26016618 tattttgatatacccaattgtattgaatatcttattattaatgaaatgctataagcatattt 26016679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 3960198 - 3960065
Alignment:
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    ||||||| ||||||| ||||||||| | ||| ||||||  ||||||| ||||  |||| ||| |||||| | |||||  ||||| |   |||| |||||     
T  3960198 tggagttcgttaggctacaagcaaatgtggtagctcataatcttgcaagagagaccacattattagctaattccgttacttattatgttatactcaattg 3960099  T
Q  218 tattgaacctattattattaatgaaatgttataa 251  Q
    ||||||| || | || ||||||||||||||||||    
T  3960098 tattgaatctttaataattaatgaaatgttataa 3960065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 29961970 - 29962007
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29961970 tattgaatctattattattaatgaaatgctataagcat 29962007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 42510067 - 42510026
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||    
T  42510067 tattgaaactattatcattaatgaaatgttataagcacattt 42510026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 19237576 - 19237811
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttaggg 117  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||| |||||    
T  19237576 tgtgatgccttccatgctcatcgagatgacacttttgaatttgggtgcattatctcatcatgtcgatctctcttcggttctttctttaccaactctaggg 19237675  T
Q  118 tggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatta 217  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||| ||||   |||| ||||||||| | ||  |||||||||||| ||| || |       
T  19237676 tggagtttattaggcgacaagcaaatgaggttgctcatgttcttgcaagagaggtcacgctactagctaattccactgtttattttcatatatccga--- 19237772  T
Q  218 tattgaacctattattattaatgaaatgttataagcatattt 259  Q
       ||||||| |||||||||||||||||||||||||||||||    
T  19237773 ---tgaacctcttattattaatgaaatgttataagcatattt 19237811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 2157982 - 2157770
Alignment:
Q  43 atgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaa 142  Q
    ||||||| || |||||||| |||||||| || || ||||| ||  ||||   | |||| ||| |||||| | |||||||||||||||||| |||||| ||    
T  2157982 atgacacatccgaatttggctgcattatttcttcttgtcgttcgttgttccctcctttattttccaactctcgggtggagtttgttaggcgacaagccaa 2157883  T
Q  143 cgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaa 242  Q
    |||| ||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||| ||||||    
T  2157882 cgagattgcttatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaa 2157783  T
Q  243 atgttataagcat 255  Q
    ||| |||||||||    
T  2157782 atgctataagcat 2157770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 22292325 - 22292526
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || || ||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||    
T  22292325 gaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 22292424  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||||| | ||  ||||||   ||||||||||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||    
T  22292425 atgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagc 22292524  T
Q  254 at 255  Q
    ||    
T  22292525 at 22292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 19741735 - 19741524
Alignment:
Q  43 atgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaa 142  Q
    ||||||| || |||||||| |||||||| || || ||||| ||| |||||| |||||| ||| |||||| ||||||| | |||||||||| |||||| ||    
T  19741735 atgacacgtccgaatttggctgcattatttcttcttgtcgttctttgtttacttctttattttccaactctagggtgaaatttgttaggcgacaagctaa 19741636  T
Q  143 cgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaa 242  Q
    || ||||||||||| ||||||| ||||| |||| |||||||||||||||| |||||||  | | ||||  | || ||||||| || ||||||| ||||||    
T  19741635 cggggttgctcatgctcttgcaagagaagccacattactagctagtcccgctgtttatcatgaaatacatatttgtattgaaactcttattatcaatgaa 19741536  T
Q  243 atgttataagca 254  Q
    ||||||||||||    
T  19741535 atgttataagca 19741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 36044827 - 36045068
Alignment:
Q  18 tgtgatgccttccatgctaatcgagatgac-acttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagg 116  Q
    ||||||||||||||| ||| || ||| ||| |||| ||||||| | |||||||| || || |||||  ||||  |||||| ||| |||||||||| |||     
T  36044827 tgtgatgccttccatactactcaagacgactactt-tgaatttaggtgcattatttcttcctgtcgtactctagttagttatttttttaccaactctaga 36044925  T
Q  117 gtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaatt 216  Q
    ||| |||||||||||| |||||| || |||||||||||| |||||| ||||||| |||| |||||||||||||||    |||||||||| || ||| | |    
T  36044926 gtgaagtttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtcccaccatttattttcatatgcccgaat 36045025  T
Q  217 atattgaacctattattattaatgaaatgttataagcatattt 259  Q
     ||||||| || ||||||||||||||||| |||||||||||||    
T  36045026 gtattgaatctcttattattaatgaaatgctataagcatattt 36045068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 23622542 - 23622654
Alignment:
Q  147 gttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgt 246  Q
    ||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||| |||||||| ||| ||||||| || |||||||||||||||||     
T  23622542 gttgctcatgtgcttgcaggagaagccacgtttctagctagtctcgttgtttattttaacatacccgattgtattgaatctcttattattaatgaaatgc 23622641  T
Q  247 tataagcatattt 259  Q
    |||||||||||||    
T  23622642 tataagcatattt 23622654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 38 - 259
Target Start/End: Complemental strand, 29955671 - 29955453
Alignment:
Q  38 tcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaa 137  Q
    |||||| |||| ||||| ||||| ||||||||| || || ||||| ||||| || || ||||  |||||||||| ||   ||||||||| ||||| ||||    
T  29955671 tcgagacgacatttctggatttgcatgcattatttcttcttgtcgatctctattcagctcttcttttaccaactcta---tggagtttgctaggcgacaa 29955575  T
Q  138 gcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattatta 237  Q
     ||||   |||||||||||| |||| | |||||  |||||| ||| |||||| | ||||||||||| |||||||  ||| ||||||| || |||||||||    
T  29955574 acaaatatggttgctcatgtgcttgtaagagaagtcacgtttctaactagtctcattgtttattttaacatacctgattgtattgaatcttttattatta 29955475  T
Q  238 atgaaatgttataagcatattt 259  Q
    |||||||||||||| |||||||    
T  29955474 atgaaatgttataatcatattt 29955453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 254
Target Start/End: Complemental strand, 29755099 - 29754948
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| |||||||||||||||||||| |||||| || | ||| |||||   |||||||  |||| |||| || || |||||||||| | | ||||    
T  29755099 tttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaa-agaagccacatttctcgctagtcccgctatctatt 29755001  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||| |||||||||| ||||||| || | ||||||||||||||| ||||||||    
T  29755000 ttcatatacccaattgtattgaaactttgattattaatgaaatgctataagca 29754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 255
Target Start/End: Original strand, 18759705 - 18759862
Alignment:
Q  97 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 196  Q
    |||||||| | |||| |||||||||||||||||||  | |||| ||||  ||| |||||| ||||||| ||||  |||| |   ||| ||||||||  ||    
T  18759705 ctttcttttctaactctagggtggagtttgttaggtgataagccaacgcagtt-ctcatgctcttgcaagagagaccacatctttagttagtcccgccgt 18759803  T
Q  197 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| | |||||||||||||||||| || ||||||||||||||||| |||||||||    
T  18759804 ttattttgatatacccaattatattgaaacttttattattaatgaaatgctataagcat 18759862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 34920134 - 34919988
Alignment:
Q  43 atgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaa 142  Q
    ||||||||||||||||||| ||||||||  | || ||||| ||| ||||||  ||||| ||| | |||| |||||| |||||| | |||| |||||||||    
T  34920134 atgacacttctgaatttggttgcattattacttcttgtcgttctttgtttaactctttattttctaactctagggtagagtttttcaggcgacaagcaaa 34920035  T
Q  143 cgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 189  Q
    ||   |||||||||  |||||| ||||  ||||||||||||||||||    
T  34920034 cggaattgctcatgcacttgcaagagacaccacgttactagctagtc 34919988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 5335355 - 5335206
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| ||||||||||||||||||||||||||| || | | | |||||   |||||||   ||| |||| || || ||||||| || | | ||||    
T  5335355 tttaccaactctagggtggagtttgttaggcaacaagctaatgtgttggctcacactcttgcaaaggaagccacatttctcgctagtctcgctatctatt 5335256  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataa 251  Q
    |||| | | |||||||||||||| || | ||||||||||||||| |||||    
T  5335255 ttcataaatccaattatattgaaactttgattattaatgaaatgatataa 5335206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 252
Target Start/End: Original strand, 28246203 - 28246405
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    |||||||| |||||||| || || ||| | ||| |||| | | |||||||| | |||| |||| ||||||||||||| | |||||  |||| ||||| ||    
T  28246203 gaatttggctgcattatttcctcctgttgttctttgttcaatactttcttttctaactctaggatggagtttgttagacgacaagtcaacgtggttgttc 28246302  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaac----ctattattattaatgaaatgttat 249  Q
    ||| ||||||| ||||   |||||   || |||||||||  ||||||||| | |||||||||| |||||||     || |||||||||||||||||||||    
T  28246303 atgctcttgcaagagaggtcacgtctttaactagtcccgccgtttatttttatatacccaattgtattgaatgaaactcttattattaatgaaatgttat 28246402  T
Q  250 aag 252  Q
    |||    
T  28246403 aag 28246405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 40299909 - 40300005
Alignment:
Q  115 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacc 211  Q
    |||||||||||||||||| ||||||||||| ||||||||||  ||| | || |||  |||| || || |||||| |||||||||||||||| |||||    
T  40299909 gggtggagtttgttaggcgacaagcaaacgtggttgctcatactctcgtagaagaggccacatttctcgctagttccgttgtttattttcatatacc 40300005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 23622432 - 23622538
Alignment:
Q  20 tgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtg 119  Q
    |||||| || ||| ||| |||||| |||| |||||||||||| |||||||| || || ||||| ||||| || || ||||  |||||||||| |||||||    
T  23622432 tgatgcttttcattctactcgagacgacatttctgaatttgggtgcattatttcttcttgtcgatctcttttcagctcttcttttaccaactctagggtg 23622531  T
Q  120 gagtttg 126  Q
    |||||||    
T  23622532 gagtttg 23622538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 13948864 - 13948783
Alignment:
Q  173 cacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||||| ||||||||| |||||||||||||||| |||||| ||| ||||||| || | ||||||| ||| ||| ||||||||    
T  13948864 cacgtttctagctagttccgttgtttattttcatataccctattgtattgaaactttgattattattgatatgctataagca 13948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 16088654 - 16088697
Alignment:
Q  211 ccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||    
T  16088654 ccaattatattgaaactattatgattaatgaaatgctataagca 16088697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 21092153 - 21092351
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    |||||||| |||||||| ||||| ||||| ||| |||||||| | || ||  | |||| ||||||||||||| |||||| |||||| || | |||  |||    
T  21092153 gaatttggctgcattatttcatcttgtcgttctttgtttagtacctttttctctaactctagggtggagtttattaggcgacaagccaatggggtccctc 21092252  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| ||||| |  |||   ||| |   |||||||||  |  ||||||||| | |||||||||| |||||||   | | ||||||||||||||||||||||    
T  21092253 atgctcttgtaatagaggtcacatctttagctagtcatgccgtttattttgaaatacccaattgtattgaa---actcttattaatgaaatgttataagc 21092349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 16569570 - 16569540
Alignment:
Q  229 ttattattaatgaaatgttataagcatattt 259  Q
    |||||||||||||||||||||||||||||||    
T  16569570 ttattattaatgaaatgttataagcatattt 16569540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 7871965 - 7871937
Alignment:
Q  227 tattattattaatgaaatgttataagcat 255  Q
    |||||||||||||||||||||||||||||    
T  7871965 tattattattaatgaaatgttataagcat 7871937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 16088569 - 16088625
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgca 164  Q
    |||| |||||||||||||||||||| |||||| ||   ||||||||||| |||||||    
T  16088569 aactctagggtggagtttgttaggcgacaagctaatatggttgctcatgctcttgca 16088625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 259
Target Start/End: Original strand, 49499347 - 49499561
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    |||| ||| ||||| || |||||||| || || ||||| |||||||| || ||||| |||||||||| |||||||||||||| ||||| ||||||||| |    
T  49499347 gacatttcagaattcgggtgcattatttcttcttgtcgatctctgttcagctctttttttaccaactctagggtggagtttgctaggcgacaagcaaatg 49499446  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
     || |||||||||||||||| ||||| ||||||| |||||||||| |||| |||||||| ||||| || ||| ||||||| || ||||||||||||||||    
T  49499447 tggctgctcatgttcttgcaagagaagccacgtttctagctagtctcgttatttattttaacatatccgattgtattgaatctcttattattaatgaaat 49499546  T
Q  245 gttataagcatattt 259  Q
    | ||||| |||||||    
T  49499547 gctataaacatattt 49499561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 45 - 255
Target Start/End: Complemental strand, 16739633 - 16739423
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacg 144  Q
    ||||| || |||||||| |||||||| || || ||||| ||  |||| | | |||| ||| |||||| | |||||||||||||||||| |||| | ||||    
T  16739633 gacacatccgaatttggctgcattatttcttcttgtcgttcgttgttcactactttattttccaactctcgggtggagtttgttaggcgacaaaccaacg 16739534  T
Q  145 aggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaat 244  Q
    || ||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||| ||||||||    
T  16739533 agattgctaatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaat 16739434  T
Q  245 gttataagcat 255  Q
    | |||||||||    
T  16739433 gctataagcat 16739423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 18357095 - 18357259
Alignment:
Q  96 tctttctttaccaactttagggtggagtttgttaggcaacaagc-aaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgtt 194  Q
    |||||||||||||||| |||||||||||||||||||  | |||| ||||| | ||||||||| ||||||||||||| ||||||||||||||| | |||||    
T  18357095 tctttctttaccaactctagggtggagtttgttaggtgataagccaaacgggattgctcatgctcttgcaggagaagccacgttactagctaattccgtt 18357194  T
Q  195 gtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 259  Q
    ||||||||| | |||||| | ||||||||| || |||||||| |||||||| |||||||||||||    
T  18357195 gtttattttgatatacccgaatatattgaatctcttattattcatgaaatgctataagcatattt 18357259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 6006225 - 6006028
Alignment:
Q  58 ttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgt 157  Q
    ||||||||||||| || |||||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| |||| ||||||     
T  6006225 ttggatgcattatttcctcatgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggtttctcatgc 6006126  T
Q  158 tcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| | ||| ||||||   ||||||||||||  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  6006125 tcttgcaagggaagccacgtctttagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 6006028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 255
Target Start/End: Original strand, 17790095 - 17790299
Alignment:
Q  51 tctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttg 150  Q
    |||||||||||||||||||| || || ||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| |||||    
T  17790095 tctgaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttg 17790194  T
Q  151 ctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttata 250  Q
    |||| | ||||||| | ||  ||||||   |||||||||  |  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| ||||    
T  17790195 ctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctata 17790294  T
Q  251 agcat 255  Q
    |||||    
T  17790295 agcat 17790299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 51 - 255
Target Start/End: Original strand, 19098537 - 19098741
Alignment:
Q  51 tctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttg 150  Q
    |||||||||||||||||||| || || ||||| ||| |||| ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| |||||    
T  19098537 tctgaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttg 19098636  T
Q  151 ctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttata 250  Q
    |||| | ||||||| | ||  ||||||   |||||||||  |  ||||||||| | |||||||||| ||||||| || ||||||| ||||||||| ||||    
T  19098637 ctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctata 19098736  T
Q  251 agcat 255  Q
    |||||    
T  19098737 agcat 19098741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 35907020 - 35906922
Alignment:
Q  160 ttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcatatt 258  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||| ||||| ||||||||| ||||||||||||    
T  35907020 ttgcaagagaagccacgttactagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgctataagcatatt 35906922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 255
Target Start/End: Original strand, 8566012 - 8566161
Alignment:
Q  106 ccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttca 205  Q
    |||||| |||||||||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||  ||||||   |||||||||||| ||| |||| | |    
T  8566012 ccaactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatga 8566111  T
Q  206 catacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
     |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  8566112 tatacccaattgtattgagactattatgatcaatgaaatgctataagcat 8566161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 31228184 - 31228385
Alignment:
Q  54 gaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctc 153  Q
    ||||||||||||||||| || ||  |||| ||| | || ||| |||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||    
T  31228184 gaatttggatgcattatttcctcccgtcgttctttattcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 31228283  T
Q  154 atgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagc 253  Q
    ||| |||||||   ||  ||||||   |||||| |||||  ||||||||| | |||  ||||| ||||||| || ||||||| ||||||||| |||||||    
T  31228284 atgctcttgcaatggaggccacgtctttagctaatcccgcagtttattttaatatattcaattgtattgaaactcttattataaatgaaatgctataagc 31228383  T
Q  254 at 255  Q
    ||    
T  31228384 at 31228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 36144765 - 36144882
Alignment:
Q  147 gttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgt 246  Q
    |||||||||||||||||| ||||  ||| ||||||| ||||||||  | |||||||||| |||||| ||| |||||||||| || ||||||||||||||     
T  36144765 gttgctcatgttcttgcacgagaggccatgttactaactagtcccactatttattttcatatacccgattgtattgaacctcttgttattaatgaaatgc 36144864  T
Q  247 tataagcatatttgcttt 264  Q
    ||||||||||||| ||||    
T  36144865 tataagcatattttcttt 36144882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 254
Target Start/End: Complemental strand, 29373080 - 29372946
Alignment:
Q  120 gagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattata 219  Q
    ||||||||||||| |||| | ||||||||||| |||| |||| || |||||  |||||||||||||||||| |||||||||||| |  ||||| | | ||    
T  29373080 gagtttgttaggcgacaaaccaacgaggttgcccatgctctttcaagagaagtcacgttactagctagtccggttgtttattttaatttacccgaatgta 29372981  T
Q  220 ttgaacctattattattaatgaaatgttataagca 254  Q
    ||||| || ||||||| ||||||||| ||||||||    
T  29372980 ttgaaactcttattatcaatgaaatgctataagca 29372946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 259
Target Start/End: Original strand, 18342570 - 18342786
Alignment:
Q  45 gacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaa-ctttagggtggagtttgttaggcaacaagc-aaa 142  Q
    |||| |||||||||| | || ||||| || |||||||| ||  | || || | |||||||||||| || ||||||| |||||||||| | |||||| |||    
T  18342570 gacaattctgaatttcgttgtattatttcttcatgtcgttcgttattcagatttttctttaccaaactctagggtgaagtttgttagacgacaagccaaa 18342669  T
Q  143 cgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaa 242  Q
    || | ||||||||| | |||||| |||| | ||||||||||||||| |||||||||||||| | |||| | | | |||  || || |||||||| |||||    
T  18342670 cgggattgctcatgctattgcagaagaagctacgttactagctagttccgttgtttattttaatatactcgaatgtataaaatctcttattattcatgaa 18342769  T
Q  243 atgttataagcatattt 259  Q
    ||| |||||||||||||    
T  18342770 atgctataagcatattt 18342786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 251
Target Start/End: Original strand, 31809105 - 31809305
Alignment:
Q  51 tctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttg 150  Q
    ||||||||||| |  ||||| || || ||||| ||| ||||| ||  ||| ||| |||||| |||||||||||||||||||| |||||| |||| ||| |    
T  31809105 tctgaatttggttctattatttcttcttgtcgttctttgtttcgtaatttattttccaactctagggtggagtttgttaggcgacaagccaacgcggtgg 31809204  T
Q  151 ctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttata 250  Q
    |||||  ||||||| ||||  ||||||   ||||||||||||  ||||||| | | ||| |||||| ||||||  ||||||| |||||||||||| ||||    
T  31809205 ctcatcctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatatccaattgtattgagactattataattaatgaaatgctata 31809304  T
Q  251 a 251  Q
    |    
T  31809305 a 31809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 31935240 - 31935386
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| ||||  |||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||| | | |    
T  31935240 aactctagggtggagtttgttaggcgacaagccaacgcagttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgata 31935339  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    ||||||||| ||||||| || | || |||||||||||| | ||||||    
T  31935340 tacccaattgtattgaatctttgatgattaatgaaatgctctaagca 31935386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 31973506 - 31973644
Alignment:
Q  116 ggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaat 215  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||  ||||||   ||||||||||||  ||||||| | | |||||||||    
T  31973506 ggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgtttattatgatatacccaat 31973605  T
Q  216 tatattgaacctattattattaatgaaatgttataagca 254  Q
    | ||||||| || | || |||||||||||| | ||||||    
T  31973606 tgtattgaatctttaatgattaatgaaatgctctaagca 31973644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 31661113 - 31660977
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||| ||||   ||| ||  || |||||||||  ||||||| | | |    
T  31661113 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggtcacttttttatctagtcccgccgtttattatgata 31661014  T
Q  208 tacccaattatattgaacctattattattaatgaaat 244  Q
    ||||||||| ||||||| || | || |||||||||||    
T  31661013 tacccaattgtattgaatctttaatgattaatgaaat 31660977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 19603059 - 19602912
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||  |||||  |||| ||||||||||  ||||||| ||||| | |||||  |||||||||||    |||||||  | |    
T  19603059 aactctagggtggagtttgttaggtgacaaggcaacgcggttgctcatactcttgcaagagaagcgacgtttttagctagtcccagcatttatttcgata 19602960  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    || || ||| |||| || || ||||||||||||||||| |||||||||    
T  19602959 tatccgattgtatttaatctcttattattaatgaaatgctataagcat 19602912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 38015257 - 38015060
Alignment:
Q  53 tgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgct 152  Q
    ||||||||| ||||||||  | |  ||||| ||| ||||||  ||||| ||| | |||| || ||||||||||||||||| |||||| |||| |||||||    
T  38015257 tgaatttggttgcattattacttattgtcgttctttgtttaactctttattttctaactctatggtggagtttgttaggcgacaagctaacggggttgct 38015158  T
Q  153 catgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataa 251  Q
     |||  |||||| ||||   |||||||||| |||||| || ||| |||| | | |||| | ||| ||||||| || ||||||| ||||||||| |||||    
T  38015157 tatgcacttgcaagagatgtcacgttactaactagtctcgctgtctattatgatatactc-attgtattgaatctcttattatcaatgaaatgctataa 38015060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 255
Target Start/End: Original strand, 53437525 - 53437682
Alignment:
Q  97 ctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgt 196  Q
    |||||||| | |||| |||||||||||||||||||  |||||  || | | ||||||||| ||||||| ||||| |||| |   |||||||||  || ||    
T  53437525 ctttcttttctaactctagggtggagtttgttaggagacaagtcaatgcgattgctcatgctcttgcaagagaagccacatctttagctagtcgtgtagt 53437624  T
Q  197 ttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| | || |  | |||||||||| || ||||||||||||||||| |||||||||    
T  53437625 ttattttgatattctga-ttatattgaaactcttattattaatgaaatgctataagcat 53437682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 19770754 - 19770609
Alignment:
Q  20 tgatgccttccatgctaatcgagatgacacttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtg 119  Q
    ||||||||| ||||||| ||| || ||||||||||||||| | |  ||||| || |||||||| ||  | || || |||||||||||||||| || ||||    
T  19770754 tgatgcctttcatgctactcgggacgacacttctgaattttggtttattatttcttcatgtcgttccttattcagctctttctttaccaactctaaggtg 19770655  T
Q  120 gagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcag 165  Q
     |||||||||||  |||| | |||  |||| |||||| ||||||||    
T  19770654 tagtttgttaggtgacaaaccaacagggtttctcatgctcttgcag 19770609  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 53394825 - 53394981
Alignment:
Q  98 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 197  Q
    ||||||| | |||| ||||||||||||| |||||  |||||  || | ||||||||||| ||||||| ||||| ||||||   |||||||||  |  |||    
T  53394825 tttcttttctaactctagggtggagttttttaggagacaagtgaatgcggttgctcatgctcttgcaagagaagccacgtctttagctagtcgtgcagtt 53394924  T
Q  198 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||| | || |  | |||||||||| || ||||||||||||||||| |||||||||    
T  53394925 tattttgatattctga-ttatattgaaactcttattattaatgaaatgctataagcat 53394981  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 4479903 - 4479866
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4479903 tattgaatctattattattaatgaaatgttataagcat 4479866  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 14485654 - 14485691
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||||||||||||||||||||||||| |||||||||    
T  14485654 tattgaacctattattattaatgaaatgctataagcat 14485691  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 36144722 - 36144766
Alignment:
Q  36 aatcgagatgacacttctgaatttggatgcattatctcatcatgt 80  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||    
T  36144722 aatcgagacgacacttctgaatttgggtgcattatatcatcatgt 36144766  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 16878000 - 16877963
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  16878000 tattgaaactattattattaatgaaatgctataagcat 16877963  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 45004299 - 45004332
Alignment:
Q  218 tattgaacctattattattaatgaaatgttataa 251  Q
    |||||||||||||||||||||||||||| |||||    
T  45004299 tattgaacctattattattaatgaaatgctataa 45004332  T

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Target: scaffold0031 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 50 - 264
Target Start/End: Original strand, 44418 - 44633
Alignment:
Q  50 ttctgaatttggatgcattatctcatcatgtcggtctctgtttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggtt 149  Q
    ||||||||||| ||| ||||||||||||||||| ||||| || ||||||||||||||||| | |||| || |||||||||||| ||||||| ||| | |     
T  44418 ttctgaatttgaatgtattatctcatcatgtcgatctcttttcagttctttctttaccaattctaggatgtagtttgttaggcgacaagcacacgggatc 44517  T
Q  150 gctcatgttcttgc-aggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgtta 248  Q
     ||||| ||||||| |  ||||  ||  |||||||||| ||| |||||||||||| | |||||| ||| |||||||||| ||||||||||||||||  ||    
T  44518 actcatattcttgcaaaaagaaatcatattactagctaatcctgttgtttattttaatatacccgattgtattgaacctcttattattaatgaaattcta 44617  T
Q  249 taagcatatttgcttt 264  Q
    |||| |||||| ||||    
T  44618 taaggatatttccttt 44633  T

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Target: scaffold0341 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 2025 - 1929
Alignment:
Q  159 cttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| ||||  ||||||||||||||||| | ||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  2025 cttgcagaagaagtcacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 1929  T

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Target: scaffold0341; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 9681 - 9585
Alignment:
Q  159 cttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    ||||||| ||||  ||||||||||||||||| | ||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  9681 cttgcagaagaagtcacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 9585  T

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Target: scaffold0040 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 255
Target Start/End: Complemental strand, 62638 - 62481
Alignment:
Q  98 tttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtt 197  Q
    ||||||| | |||| |||||||||||||||||||| |||||| |||| ||||||||||  |||| |  |  |  |||| |   |||||||||||| ||||    
T  62638 tttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcattctctttctaggtaggccacttctttagctagtcccgctgtt 62539  T
Q  198 tattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||| | |||| ||||| ||||||| || ||||||||||||||||| |||||||||    
T  62538 tattttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcat 62481  T

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Target: scaffold0643 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 1042 - 1194
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||||||||| |||||||||||||||||||| |||| | || | ||| |||||   |||| || | ||| |||| || || |||||||||| | ||||||    
T  1042 tttaccaactctagggtggagtttgttaggcgacaaactaatgtggtggctcacaatcttacaagggaagccacatttctcgctagtcccgctatttatt 1141  T
Q  202 ttcacatacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||| |||||||||| |||||||  | | ||||||||||||||| ||||||||    
T  1142 ttcatatacccaattgtattgaatgtttgattattaatgaaatgctataagca 1194  T

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Target: scaffold0019 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 73471 - 73335
Alignment:
Q  115 gggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcacatacccaa 214  Q
    |||||||||||| || |  ||||||||| | ||||||| ||   || ||||||||  ||||||| |||||||||||||||||||| ||| | ||||||||    
T  73471 gggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgtttacttttatatacccaa 73372  T
Q  215 ttatattgaacctattattattaatgaaatgttataa 251  Q
    || ||||||| || | ||||||||||| |||||||||    
T  73371 ttgtattgaaactttgattattaatgatatgttataa 73335  T

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Target: scaffold0011 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 191162 - 191051
Alignment:
Q  90 tttagttctttctttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtc 189  Q
    ||||||||||||||| | |||| |||||||||||||||||||| |||||| |||| |||||||||||  |||||| || || |||||||  || ||||||    
T  191162 tttagttctttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagaaaagccacgttcttaactagtc 191063  T
Q  190 ccgttgtttatt 201  Q
    ||| | ||||||    
T  191062 ccgctatttatt 191051  T

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Target: scaffold0789 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 4356 - 4210
Alignment:
Q  108 aactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttattttcaca 207  Q
    |||| |||||||||||||||||||| |||||| || ||||||||||||| | ||||| || |  |||| |   ||||||||||||   |||| | | | |    
T  4356 aactctagggtggagtttgttaggcgacaagccaaagaggttgctcatgctattgcacgaaaggccacatctttagctagtcccgccatttaatatgata 4257  T
Q  208 tacccaattatattgaacctattattattaatgaaatgttataagca 254  Q
    |||||| || ||||||| |||||||||| ||||||||| ||||||||    
T  4256 tacccacttgtattgaaactattattatcaatgaaatgctataagca 4210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 42576 - 42466
Alignment:
Q  102 tttaccaactttagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaacccacgttactagctagtcccgttgtttatt 201  Q
    |||| ||||| | |||||||||||| ||||| |||| |||||| ||||| ||||  ||| | ||||||  ||||||| |  |||||||||||||||||||    
T  42576 tttaacaactctcgggtggagtttgctaggcgacaaacaaacgtggttgttcatactctcgtaggagaggccacgtttcacgctagtcccgttgtttatt 42477  T
Q  202 ttcacataccc 212  Q
    || | ||||||    
T  42476 tttatataccc 42466  T

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Target: scaffold0198 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 21874 - 21815
Alignment:
Q  196 tttattttcacatacccaattatattgaacctattattattaatgaaatgttataagcat 255  Q
    |||||||| | || ||||||| ||||||| || ||||||| |||||||||||||||||||    
T  21874 tttatttttatatccccaattgtattgaatctcttattataaatgaaatgttataagcat 21815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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