View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7515_high_1 (Length: 647)

Name: NF7515_high_1
Description: NF7515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7515_high_1
NF7515_high_1
[»] chr3 (11 HSPs)
chr3 (311-631)||(8362840-8363160)
chr3 (12-217)||(8363389-8363595)
chr3 (334-477)||(17521899-17522042)
chr3 (161-297)||(17546371-17546507)
chr3 (143-226)||(26883002-26883085)
chr3 (12-89)||(14800415-14800492)
chr3 (13-118)||(26883102-26883207)
chr3 (257-301)||(8363357-8363401)
chr3 (14-118)||(17546542-17546646)
chr3 (408-467)||(17350299-17350357)
chr3 (234-295)||(14800161-14800222)
[»] chr1 (8 HSPs)
chr1 (311-479)||(18645372-18645540)
chr1 (317-476)||(42377475-42377631)
chr1 (143-301)||(42378400-42378558)
chr1 (40-118)||(42378575-42378653)
chr1 (13-75)||(18896099-18896161)
chr1 (161-282)||(22095603-22095724)
chr1 (12-56)||(30989134-30989178)
chr1 (234-271)||(17773717-17773754)
[»] chr7 (4 HSPs)
chr7 (317-467)||(11454265-11454415)
chr7 (13-116)||(21936271-21936374)
chr7 (16-106)||(9633778-9633868)
chr7 (334-396)||(7230767-7230829)
[»] chr2 (14 HSPs)
chr2 (150-301)||(16374487-16374638)
chr2 (311-477)||(16374838-16375003)
chr2 (326-477)||(30614717-30614868)
chr2 (317-465)||(18370604-18370752)
chr2 (13-246)||(27877665-27877890)
chr2 (12-116)||(18831154-18831258)
chr2 (143-301)||(25897016-25897174)
chr2 (190-245)||(30615104-30615159)
chr2 (12-78)||(18371206-18371272)
chr2 (234-293)||(27180032-27180091)
chr2 (234-293)||(27829574-27829633)
chr2 (427-467)||(16594357-16594397)
chr2 (159-243)||(18831293-18831377)
chr2 (12-56)||(25897249-25897293)
[»] chr8 (6 HSPs)
chr8 (14-116)||(22471884-22471986)
chr8 (317-445)||(22472413-22472541)
chr8 (12-115)||(22470422-22470525)
chr8 (12-112)||(28915180-28915280)
chr8 (234-301)||(22472160-22472227)
chr8 (16-58)||(8988934-8988976)
[»] chr4 (2 HSPs)
chr4 (16-106)||(13603378-13603468)
chr4 (364-413)||(17278229-17278278)
[»] chr6 (6 HSPs)
chr6 (12-91)||(22903593-22903672)
chr6 (317-393)||(22902104-22902180)
chr6 (12-87)||(22885639-22885714)
chr6 (12-91)||(22918437-22918516)
chr6 (325-393)||(22916934-22917002)
chr6 (325-393)||(22884206-22884274)
[»] scaffold0054 (1 HSPs)
scaffold0054 (12-91)||(9152-9231)
[»] chr5 (1 HSPs)
chr5 (170-246)||(24803048-24803124)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 311 - 631
Target Start/End: Complemental strand, 8363160 - 8362840
Alignment:
Q  311 acaaatagttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattat 410  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8363160 acaaatagttttgccataaaataaaacttgacacacaagacactttgaggaaccctaagagtatggattgctaggtgctttaacatgtgataaatattat 8363061  T
Q  411 aaaagaaacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaaaataagaactatccttaagagatccgtaaattacaatatcctctt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363060 aaaagaaacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaaaataagaactatccttaagagatccgtaaattacaatatcctctt 8362961  T
Q  511 cttttgttttgaaacacacagtcttcccttaaaagatgaannnnnnnaccagtttaactatttttaaactttccgttaactgttgatggtgatttgcaga 610  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8362960 cttttgttttgaaacacacagtcttcccttaaaagatgaatttttttaccagtttaactatttttaaactttccgttaactgttgatggtgatttgcaga 8362861  T
Q  611 ctcctgttctgtgttggaaga 631  Q
    |||||||||| ||||||||||    
T  8362860 ctcctgttctatgttggaaga 8362840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 8363595 - 8363389
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8363595 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttgaaaggtgtatgggtataactatatataggcaggagtgataagagcaa 8363496  T
Q  112 tattttacgc-nnnnnnnnnnnnnnnnnnnnntgattcaattcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaag 210  Q
    ||||||| ||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363495 tattttaagcaaaaaataataataaaacaatatgattcaattcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaag 8363396  T
Q  211 gttgata 217  Q
    |||||||    
T  8363395 gttgata 8363389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 334 - 477
Target Start/End: Complemental strand, 17522042 - 17521899
Alignment:
Q  334 aaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattataaaagaaacaataaacatcacca 433  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||| ||  ||||||||||| |||| | |||| ||||||||||| |||||| ||    
T  17522042 aaacttgacacacaagacactttgagaaaccctaagatcatggattgctaagtcttttaacatgtgctaaacaatatagaagaaacaatagacatcatca 17521943  T
Q  434 aattatctagcatcgtaatcaaacatcatcaaaataagaactat 477  Q
    | ||||||| || |  ||||||||||||| |||| |||| ||||    
T  17521942 atttatctaacaacccaatcaaacatcataaaaacaagagctat 17521899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 17546507 - 17546371
Alignment:
Q  161 gtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaatcaaagtaaccaaaatga 260  Q
    |||| |||||||||||||||||  ||||||| |||| || || ||||||||| |||| ||||    |||||| ||||||||||||||||| || | ||||    
T  17546507 gtgtaattcgattcaaacatgtgcaaatggatagatatgaagatatgaaggtagataagatttcgacaatatgtgaatcgaatcaaagtagcccagatga 17546408  T
Q  261 aggttgatacgtatcaaagaacaatgatacgattcaa 297  Q
    || |||||||| ||||||||||| |||||||||||||    
T  17546407 agattgatacgaatcaaagaacattgatacgattcaa 17546371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 26883085 - 26883002
Alignment:
Q  143 tgattcaattcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaag 226  Q
    |||||| ||||| | ||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||    
T  26883085 tgattcgattcatataaagtgtgatttgattcaaacatgtataaatgggcagatttggagctatgaaggttgatacgattcaag 26883002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 14800492 - 14800415
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatata 89  Q
    ||||| ||||||| ||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  14800492 agagaaaggtttggagactctagaataatatttgcaattgattcagttggttggaaggtgtatgggtatatctatata 14800415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 26883207 - 26883102
Alignment:
Q  13 gagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaat 112  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||  |||||||  |||||  |||||||||||||| ||||| || | ||| ||||     
T  26883207 gagagaggtttggagactctagtatgttatttgcaattgattcagttgtttggaagtggtatgaatataactatatatatgcaggggtaacaagtgcaac 26883108  T
Q  113 atttta 118  Q
    ||||||    
T  26883107 atttta 26883102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 8363401 - 8363357
Alignment:
Q  257 atgaaggttgatacgtatcaaagaacaatgatacgattcaacaag 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8363401 atgaaggttgatacgtatcaaagaacaatgatacgattcaacaag 8363357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 17546646 - 17546542
Alignment:
Q  14 agagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaata 113  Q
    ||||||||||| |||||||||||||||| | |||||||||| |||   |||||||  |||||| |||| ||||||||||||||| || ||||| |||| |    
T  17546646 agagaggtttggagactctagaatgttacttgcaattgatttagtagtttggaagtggtatggttatagctatatataggcaggggtcataagtgcaaca 17546547  T
Q  114 tttta 118  Q
    |||||    
T  17546546 tttta 17546542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 467
Target Start/End: Original strand, 17350299 - 17350357
Alignment:
Q  408 tataaaagaaacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaaaa 467  Q
    |||||||| ||||||||| |||| |||| ||||||||| | |||||||||||||||||||    
T  17350299 tataaaaggaacaataaa-atcatcaaaatatctagcagcctaatcaaacatcatcaaaa 17350357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 14800222 - 14800161
Alignment:
Q  234 tgaatcgaatcaaagtaaccaaaatgaaggttgatacgtatcaaagaacaatgatacgattc 295  Q
    |||||||| | ||||  ||||| |||||| |||||||| ||||||||||||||||| |||||    
T  14800222 tgaatcgatttaaagagaccaagatgaagattgatacgaatcaaagaacaatgatatgattc 14800161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 311 - 479
Target Start/End: Original strand, 18645372 - 18645540
Alignment:
Q  311 acaaatagttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattat 410  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| | |||| |||||||||| ||||||| |||||||| | ||| |||| |||||    
T  18645372 acaaaaagttttgccacaaaataaaacttgacacacaagacactttgaaggaccctaagagcatgggttgctagatgctttaagaagtgctaaacattat 18645471  T
Q  411 aaaagaaacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaaaataagaactatcc 479  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||  ||||||||    
T  18645472 aaaagaaacaataaacatcatcaaattatctagcatcctactcaaacatcatcaaaatacaaactatcc 18645540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 317 - 476
Target Start/End: Complemental strand, 42377631 - 42377475
Alignment:
Q  317 agttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattataaaaga 416  Q
    ||||||| | |||||| ||||||||||||| |||| ||| || |||||| |||||||| ||||||||||||||||| |||||| |||  |||||||||      
T  42377631 agttttgtcgcaaaataaaacttgacacacgagacgctt-gaagaaccctaagagcatagattgctaggtgcttta-catgtgctaac-attataaaatg 42377535  T
Q  417 aacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaaaataagaacta 476  Q
    | |||||||||||| |||||||||||||||| ||||||||||| ||||||| || |||||    
T  42377534 agcaataaacatcatcaaattatctagcatcctaatcaaacattatcaaaacaaaaacta 42377475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 143 - 301
Target Start/End: Complemental strand, 42378558 - 42378400
Alignment:
Q  143 tgattcaattcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaa 242  Q
    |||||| ||| |||| |||| |||||||| ||| |||||| |||||||| | || || |||||| ||| ||||||||||| || || ||| |||||| ||    
T  42378558 tgattcgatttagagtaagtatgattcgactcagacatgtgtaaatggataaatttggagctataaagcttgatatgatttaaacattatttgaatcaaa 42378459  T
Q  243 tcaaagtaaccaaaatgaaggttgatacgtatcaaagaacaatgatacgattcaacaag 301  Q
    ||||||||||  | | ||||||||||||  ||||||||| | ||||| |||||||||||    
T  42378458 tcaaagtaactgagaagaaggttgatacaaatcaaagaatattgatatgattcaacaag 42378400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 42378653 - 42378575
Alignment:
Q  40 tattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatatttta 118  Q
    |||| |||||||||||||| ||||||||||||||||||||||  |||||| ||||||||||||||||  ||||||||||    
T  42378653 tatttgcaattgattcagtgagttggaaggtgtatgggtatagttatatacaggcaggagtgataagttcaatatttta 42378575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 18896099 - 18896161
Alignment:
Q  13 gagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatg 75  Q
    |||||||||||| |||||||| |||| |||| |||||||||||||| ||||||||| ||||||    
T  18896099 gagagaggtttggagactctaaaatgatatttgcaattgattcagtaagttggaagttgtatg 18896161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 22095603 - 22095724
Alignment:
Q  161 gtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaatcaaagtaaccaaaatga 260  Q
    ||||||||  ||||| |||||| |||||||| ||||||   ||||||||||||| || || ||| | ||||| | |||||||| | || |||| | ||||    
T  22095603 gtgtgatttcattcagacatgtgtaaatggatagatctacggctatgaaggttggtacgaatcatgaaatatgttaatcgaataagagcaacccagatga 22095702  T
Q  261 aggttgatacgtatcaaagaac 282  Q
    ||||||||||| ||||||||||    
T  22095703 aggttgatacgaatcaaagaac 22095724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 30989134 - 30989178
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattca 56  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||    
T  30989134 agagagaggtttggagactctagaatgttatttgcaattgattca 30989178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 17773754 - 17773717
Alignment:
Q  234 tgaatcgaatcaaagtaaccaaaatgaaggttgatacg 271  Q
    |||||||||||||||||||| | |||||||||||||||    
T  17773754 tgaatcgaatcaaagtaacccagatgaaggttgatacg 17773717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 317 - 467
Target Start/End: Complemental strand, 11454415 - 11454265
Alignment:
Q  317 agttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattataaaaga 416  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||  |||||||||||||| || ||| || || |||||||||||||||     
T  11454415 agttttgccacaaaatgaaacttgacacacaaaacactttgaagaaccctaagaatatggattgctaggtactataaaatatgctaaatattataaaagg 11454316  T
Q  417 aacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaaaa 467  Q
    |||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  11454315 aacaataaacatcatcaaattatctagcatcctaatcaaacatcataaaaa 11454265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 21936271 - 21936374
Alignment:
Q  13 gagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaat 112  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| || |||||||| |||||||||||  |||||    
T  21936271 gagagaggtttggagactctagaatgttatttgcaattgattcagtaagttggaagttgtatgggtatatctgtatataggaaggagtgataactgcaat 21936370  T
Q  113 attt 116  Q
    ||||    
T  21936371 attt 21936374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 9633868 - 9633778
Alignment:
Q  16 agaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataag 106  Q
    ||||||||| |||||||||| || |||| |||||||||||| | |||||||||||||||| |||||||||||||||  || ||||||||||    
T  9633868 agaggtttggagactctagattgatatttgcaattgattcattgagttggaaggtgtatgtgtataactatatatatacatgagtgataag 9633778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 7230767 - 7230829
Alignment:
Q  334 aaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacat 396  Q
    |||||||||||||||||||||||||||||  | |||| |||||||  |||| |||||||||||    
T  7230767 aaacttgacacacaagacactttgaggaaagctaagaccatggatgactagctgctttaacat 7230829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 150 - 301
Target Start/End: Original strand, 16374487 - 16374638
Alignment:
Q  150 attcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaatcaaagt 249  Q
    |||||||| |||| |||||| |||||||||||| |||||||||| || || ||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  16374487 attcagagtaagtatgattcaattcaaacatgtgtaaatggacaaatttggagctatgaaggtttatacgattcaagcaatatttgaatcgaatcaaagt 16374586  T
Q  250 aaccaaaatgaaggttgatacgtatcaaagaacaatgatacgattcaacaag 301  Q
    |||| | ||||||||||||| | ||||||||||| | |||||||||||||||    
T  16374587 aacccagatgaaggttgatatgaatcaaagaacagtaatacgattcaacaag 16374638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 311 - 477
Target Start/End: Original strand, 16374838 - 16375003
Alignment:
Q  311 acaaatagttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattat 410  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||||||| |||||| || | ||| ||||||||||||||||||||||   |||| |||||    
T  16374838 acaaaaagtttcgccacgaaatgaaacttaacacacaagacactttgaagaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattat 16374937  T
Q  411 aaaagaaacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaaaataagaactat 477  Q
     |||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  16374938 -aaagaaacaataaatatcatcaaattatctaacatcctaatcaaacatcatcaaaacaagaactat 16375003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 326 - 477
Target Start/End: Complemental strand, 30614868 - 30614717
Alignment:
Q  326 acaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattataaaagaaacaataaa 425  Q
    ||||||||||||||||||||||| ||||||  | |||||  ||||||||| ||||||||||||||||||||||| |||| ||  |||||| ||| |||||    
T  30614868 acaaaatgaaacttgacacacaaaacacttcaaagaaccgtaagagcatgtattgctaggtgctttaacatgtgttaaacatcgtaaaaggaaccataaa 30614769  T
Q  426 catcaccaaattatctagcatcgtaatcaaacatcatcaaaataagaactat 477  Q
    ||||| |||||||||||||||| ||||||||||| | | ||| |||||||||    
T  30614768 catcatcaaattatctagcatcctaatcaaacattagcgaaacaagaactat 30614717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 317 - 465
Target Start/End: Complemental strand, 18370752 - 18370604
Alignment:
Q  317 agttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattataaaaga 416  Q
    ||||||||||||| ||||||||||| ||||| |||||||||| |||||| || | ||||||||||||||||||||||||| || |||  || |||||       
T  18370752 agttttgccacaatatgaaacttgaaacacacgacactttgaagaaccctaaaatcatggattgctaggtgctttaacatatggtaatcatcataaagag 18370653  T
Q  417 aacaataaacatcaccaaattatctagcatcgtaatcaaacatcatcaa 465  Q
    |||||||||||||| |||  || |||||| | |||||||||||||||||    
T  18370652 aacaataaacatcatcaatatacctagcaacctaatcaaacatcatcaa 18370604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 27877890 - 27877665
Alignment:
Q  13 gagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaat 112  Q
    |||||||||||| || ||||||||||| ||| ||||||| |||||| |||||||| |||||||||||||  |||||||| |||| ||||||||| ||| |    
T  27877890 gagagaggtttggaggctctagaatgtcatttgcaattgcttcagtaagttggaaagtgtatgggtatagttatatataagcagaagtgataagtgcagt 27877791  T
Q  113 attttacgcnnnnnnnnnnnnnnnnnnnnntgattcaattcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggt 212  Q
    |||||| ||                     |||||| ||||| |||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||||    
T  27877790 attttaggcaaaaacaacgaca--------tgattcgattcaaagaaagtgtgattcgattcagacatgtgtaaatggataaatctggagctatgaaggt 27877699  T
Q  213 tgatatgattcaagcaatatctgaatcgaatcaa 246  Q
    ||||| |||| ||| || || |||||||||||||    
T  27877698 tgatacgattaaagtaacatttgaatcgaatcaa 27877665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 18831154 - 18831258
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaa 111  Q
    |||||| | |||| ||||||||||| |||||| |||  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||| ||||    
T  18831154 agagagggctttggagactctagaaagttatttgcatctgattcagtgagttggaaggtgtataggtatagctacatataggcaggagtgataagtgcaa 18831253  T
Q  112 tattt 116  Q
    |||||    
T  18831254 tattt 18831258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 143 - 301
Target Start/End: Complemental strand, 25897174 - 25897016
Alignment:
Q  143 tgattcaattcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaa 242  Q
    |||||||| ||||| ||||||| ||||||||||||||||| ||||| | || ||||| | | |||||||||||||||||| |   ||||| |||||| ||    
T  25897174 tgattcaaatcagataaagtgtaattcgattcaaacatgtgtaaattggcaaatctgaaacaatgaaggttgatatgatttagaaaatatttgaatcaaa 25897075  T
Q  243 tcaaagtaaccaaaatgaaggttgatacgtatcaaagaacaatgatacgattcaacaag 301  Q
    ||||    ||| | |||||| |||||| | | ||||||||||||||| |||| ||||||    
T  25897074 tcaagacgacctagatgaagattgatatgaaccaaagaacaatgatatgattaaacaag 25897016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 30615159 - 30615104
Alignment:
Q  190 gacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaatca 245  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  30615159 gacagatttgtagctatgaaggttgatacgattcaagcaatatttgaatcgaatca 30615104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 18371272 - 18371206
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggt 78  Q
    ||||||||||||  ||||||||||||| |||| |||||||||| ||| |||| ||||||||||||||    
T  18371272 agagagaggtttagagactctagaatgatatttgcaattgatttagtgagtttgaaggtgtatgggt 18371206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 27180091 - 27180032
Alignment:
Q  234 tgaatcgaatcaaagtaaccaaaatgaaggttgatacgtatcaaagaacaatgatacgat 293  Q
    |||||||||||||||||||| | ||||||||| ||||  ||||| ||||| |||||||||    
T  27180091 tgaatcgaatcaaagtaacctagatgaaggttaatacaaatcaatgaacagtgatacgat 27180032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 27829633 - 27829574
Alignment:
Q  234 tgaatcgaatcaaagtaaccaaaatgaaggttgatacgtatcaaagaacaatgatacgat 293  Q
    |||||||||||||||||||| | ||||||||| ||||  ||||| ||||| |||||||||    
T  27829633 tgaatcgaatcaaagtaacctagatgaaggttaatacaaatcaatgaacagtgatacgat 27829574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 16594357 - 16594397
Alignment:
Q  427 atcaccaaattatctagcatcgtaatcaaacatcatcaaaa 467  Q
    |||| ||||||||||| |||| |||||||||||||||||||    
T  16594357 atcatcaaattatctaacatcctaatcaaacatcatcaaaa 16594397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 18831293 - 18831377
Alignment:
Q  159 aagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaat 243  Q
    |||| |||||||||||| ||||||  ||| ||| | |||   |||||||||| |||||| |||||||||||||| | ||||||||    
T  18831293 aagtatgattcgattcagacatgtgaaaaaggataaatcaagagctatgaagattgatacgattcaagcaatattttaatcgaat 18831377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25897293 - 25897249
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattca 56  Q
    ||||||| ||||| |||||||||||||||| | ||||||||||||    
T  25897293 agagagaagtttggagactctagaatgttactcgcaattgattca 25897249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 22471884 - 22471986
Alignment:
Q  14 agagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaata 113  Q
    |||||||||||||||||||||||||||||| |  |||||||  || |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  22471884 agagaggtttgaagactctagaatgttatttgtcattgatttggtaagttggaaggtgtatgggtatagctacatataggcaggagtgataagtgcaata 22471983  T
Q  114 ttt 116  Q
    |||    
T  22471984 ttt 22471986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 317 - 445
Target Start/End: Original strand, 22472413 - 22472541
Alignment:
Q  317 agttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaacatgtgataaatattataaaaga 416  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||| |||| |||||||||||  || ||||||||| || |||  | ||||||||     
T  22472413 agttttgccacaaaataaaacttgacacacaagatactttgaagaaccctaagaacatggattgctctgttctttaacatatgctaatcactataaaagg 22472512  T
Q  417 aacaataaacatcaccaaattatctagca 445  Q
    |||||||||||| | |||| |||||||||    
T  22472513 aacaataaacataatcaaaatatctagca 22472541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 22470422 - 22470525
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaa 111  Q
    ||||||||| ||| |||||| ||||||||||| |||||  ||||||  |||||||||||||||||||||| ||||||| || || |||||||||| ||||    
T  22470422 agagagagggttggagactcaagaatgttattagcaatatattcaggaagttggaaggtgtatgggtatagctatatacagacatgagtgataagtgcaa 22470521  T
Q  112 tatt 115  Q
    ||||    
T  22470522 tatt 22470525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 28915180 - 28915280
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaa 111  Q
    ||||||| ||||| |||||||| ||||||||| ||||||||||   | |||||||| ||||||||||||| |||||||||| || |||||| ||| ||||    
T  28915180 agagagaagtttggagactctaaaatgttatttgcaattgattttatgagttggaaagtgtatgggtatagctatatatagacatgagtgacaagtgcaa 28915279  T
Q  112 t 112  Q
    |    
T  28915280 t 28915280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 22472160 - 22472227
Alignment:
Q  234 tgaatcgaatcaaagtaaccaaaatgaaggttgatacgtatcaaagaacaatgatacgattcaacaag 301  Q
    ||||| || ||||||||||  ||||||||||||||||| |||||| |||| |||||||||||| ||||    
T  22472160 tgaattgattcaaagtaactcaaatgaaggttgatacgaatcaaataacagtgatacgattcatcaag 22472227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 8988976 - 8988934
Alignment:
Q  16 agaggtttgaagactctagaatgttattggcaattgattcagt 58  Q
    ||||||| | |||||||||||||||||| ||||||||||||||    
T  8988976 agaggttaggagactctagaatgttatttgcaattgattcagt 8988934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 13603378 - 13603468
Alignment:
Q  16 agaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataag 106  Q
    ||||||||| |||||||||| || |||| |||||||||||| | |||||||||||||||| |||||||||||||||  || ||||||||||    
T  13603378 agaggtttggagactctagattgatatttgcaattgattcattgagttggaaggtgtatgtgtataactatatatatacatgagtgataag 13603468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 17278278 - 17278229
Alignment:
Q  364 cccaagagcatggattgctaggtgctttaacatgtgataaatattataaa 413  Q
    ||||||| ||||||||||||||||||||||||| || ||| |||||||||    
T  17278278 cccaagaacatggattgctaggtgctttaacatatgctaactattataaa 17278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 22903672 - 22903593
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatata 91  Q
    ||||||||||||| |||||||||||| ||||| |||||||||| | | |||||||||||||||  |||||||||||||||    
T  22903672 agagagaggtttggagactctagaatattatttgcaattgattaaataagttggaaggtgtattagtataactatatata 22903593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 317 - 393
Target Start/End: Complemental strand, 22902180 - 22902104
Alignment:
Q  317 agttttgccacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaa 393  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||| |  |||| ||||||| ||||||||||||||    
T  22902180 agttttgccacaaaatgaaacttgacagacgagacactttgaagaaacttaagatcatggatggctaggtgctttaa 22902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 22885714 - 22885639
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactata 87  Q
    |||| |||||||| |||||||||||| ||||| |||||||||| | | |||||||||||||||| |||||||||||    
T  22885714 agagcgaggtttggagactctagaatattatttgcaattgattaaataagttggaaggtgtatgagtataactata 22885639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 22918516 - 22918437
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatata 91  Q
    ||||||||||||| |||||||||||| ||||| |||||||||| | | |||||||||||||| | |||||| ||||||||    
T  22918516 agagagaggtttggagactctagaatattatttgcaattgattaaatgagttggaaggtgtacgagtataaatatatata 22918437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 22917002 - 22916934
Alignment:
Q  325 cacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaa 393  Q
    |||||||||||||||||||||||||||||||||| ||| |  |||| ||||||| ||||| ||||||||    
T  22917002 cacaaaatgaaacttgacacacaagacactttgaagaaacttaagatcatggatggctagatgctttaa 22916934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 22884274 - 22884206
Alignment:
Q  325 cacaaaatgaaacttgacacacaagacactttgaggaaccccaagagcatggattgctaggtgctttaa 393  Q
    ||||||||||||||||||| || ||||||||||| ||| |  |||| ||||||| ||||||||||||||    
T  22884274 cacaaaatgaaacttgacagacgagacactttgaagaaacttaagatcatggatggctaggtgctttaa 22884206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 9231 - 9152
Alignment:
Q  12 agagagaggtttgaagactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatata 91  Q
    |||| |||||||| |||||||||||| ||||| |||||||||| | | |||||||||||||||  |||||||||||||||    
T  9231 agagcgaggtttggagactctagaatattatttgcaattgattaaataagttggaaggtgtattagtataactatatata 9152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 24803124 - 24803048
Alignment:
Q  170 gattcaaacatgtataaatggacagatctgtagctatgaaggttgatatgattcaagcaatatctgaatcgaatcaa 246  Q
    |||||||||||||  ||| ||| | || || |||||||||| |||||| |||||||  ||||| |||||||||||||    
T  24803124 gattcaaacatgtgaaaagggataaatatggagctatgaagattgatacgattcaactaatatttgaatcgaatcaa 24803048  T

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